Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:22777377-23427387

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lhfpl3 5 22746059 to 23275597 529538 + protein coding gene lipoma HMGIC fusion partner-like 3
Gm21846 5 22775630 to 22778702 3072 + lincRNA gene predicted gene, 21846
A930037G07Rik 5 22781339 to 22782250 911 unclassified gene RIKEN cDNA A930037G07 gene
Cpgi15577 5 22851612 to 22851796 184 CpG island CpG island 15577
Gm43169 5 22863812 to 22868545 4733 - unclassified gene predicted gene 43169
Tssr45353 5 22908333 to 22908359 26 + TSS region transcription start site region 45353
Gm6564 5 22931395 to 22932013 618 - pseudogene predicted pseudogene 6564
Tssr50258 5 22932066 to 22932076 10 - TSS region transcription start site region 50258
Tssr45354 5 22991075 to 22991076 1 + TSS region transcription start site region 45354
Gm11159 5 23052503 to 23058129 5626 unclassified gene predicted gene 11159
Tssr45355 5 23102377 to 23102387 10 + TSS region transcription start site region 45355
Tssr45356 5 23102389 to 23102413 24 + TSS region transcription start site region 45356
Gm3668 5 23143397 to 23145926 2529 + pseudogene predicted gene 3668
Gm42948 5 23200920 to 23223796 22876 - antisense lncRNA gene predicted gene 42948
Gm28022 5 23279866 to 23279911 45 - miRNA gene predicted gene, 28022
Tssr45357 5 23314322 to 23314333 11 + TSS region transcription start site region 45357
Tssr45358 5 23314346 to 23314356 10 + TSS region transcription start site region 45358
Gm42951 5 23330370 to 23347274 16904 - lincRNA gene predicted gene 42951
Gm17434 5 23330644 to 23339650 9006 + protein coding gene predicted gene, 17434
Gm43722 5 23376496 to 23376619 123 + pseudogene predicted gene 43722
5031425E22Rik 5 23382308 to 23434269 51961 - lincRNA gene RIKEN cDNA 5031425E22 gene
Tssr50259 5 23386475 to 23386499 24 - TSS region transcription start site region 50259
Tssr50260 5 23386885 to 23386924 39 - TSS region transcription start site region 50260
Cpgi15578 5 23386933 to 23387213 280 CpG island CpG island 15578
Tssr50261 5 23386984 to 23387016 32 - TSS region transcription start site region 50261
Tssr50262 5 23387033 to 23387061 28 - TSS region transcription start site region 50262
4930580E04Rik 5 23387109 to 23388601 1492 + lincRNA gene RIKEN cDNA 4930580E04 gene
Tssr45359 5 23387261 to 23387269 8 + TSS region transcription start site region 45359
Tssr45360 5 23387273 to 23387297 24 + TSS region transcription start site region 45360
Tssr45361 5 23387300 to 23387317 17 + TSS region transcription start site region 45361
Gm43058 5 23387620 to 23388244 624 - pseudogene predicted gene 43058
D5Jcs54 5 23389533 to 23389682 149 DNA segment DNA segment, Chr 5, John C. Schimenti 54
Gm42509 5 23396103 to 23396883 780 + unclassified gene predicted gene 42509
Gm46902 5 23399283 to 23402333 3050 - lncRNA gene predicted gene, 46902
Tssr50263 5 23402576 to 23402578 2 - TSS region transcription start site region 50263
Tssr50264 5 23403286 to 23403308 22 - TSS region transcription start site region 50264
2900022P04Rik 5 23404276 to 23405072 796 unclassified gene RIKEN cDNA 2900022P04 gene
Cpgi15579 5 23418250 to 23418720 470 CpG island CpG island 15579
Tssr50265 5 23418514 to 23418557 43 - TSS region transcription start site region 50265
Tssr45362 5 23418609 to 23418650 41 + TSS region transcription start site region 45362