Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:22692377-23512387

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm9523 5 22693561 to 22694719 1158 - pseudogene predicted gene 9523
Gm32711 5 22722850 to 22723957 1107 - pseudogene predicted gene, 32711
Gm6560 5 22724578 to 22726168 1590 - pseudogene predicted gene 6560
A930003O13Rik 5 22738910 to 22746884 7974 - lincRNA gene RIKEN cDNA A930003O13 gene
Gm44363 5 22739019 to 22739111 92 + miRNA gene predicted gene, 44363
Cpgi15576 5 22745630 to 22746830 1200 CpG island CpG island 15576
Tssr45350 5 22746017 to 22746083 66 + TSS region transcription start site region 45350
Lhfpl3 5 22746059 to 23275597 529538 + protein coding gene lipoma HMGIC fusion partner-like 3
Tssr45351 5 22746118 to 22746130 12 + TSS region transcription start site region 45351
Tssr45352 5 22746180 to 22746268 88 + TSS region transcription start site region 45352
Gm21846 5 22775630 to 22778702 3072 + lincRNA gene predicted gene, 21846
A930037G07Rik 5 22781339 to 22782250 911 unclassified gene RIKEN cDNA A930037G07 gene
Cpgi15577 5 22851612 to 22851796 184 CpG island CpG island 15577
Gm43169 5 22863812 to 22868545 4733 - unclassified gene predicted gene 43169
Tssr45353 5 22908333 to 22908359 26 + TSS region transcription start site region 45353
Gm6564 5 22931395 to 22932013 618 - pseudogene predicted pseudogene 6564
Tssr50258 5 22932066 to 22932076 10 - TSS region transcription start site region 50258
Tssr45354 5 22991075 to 22991076 1 + TSS region transcription start site region 45354
Gm11159 5 23052503 to 23058129 5626 unclassified gene predicted gene 11159
Tssr45355 5 23102377 to 23102387 10 + TSS region transcription start site region 45355
Tssr45356 5 23102389 to 23102413 24 + TSS region transcription start site region 45356
Gm3668 5 23143397 to 23145926 2529 + pseudogene predicted gene 3668
Gm42948 5 23200920 to 23223796 22876 - antisense lncRNA gene predicted gene 42948
Gm28022 5 23279866 to 23279911 45 - miRNA gene predicted gene, 28022
Tssr45357 5 23314322 to 23314333 11 + TSS region transcription start site region 45357
Tssr45358 5 23314346 to 23314356 10 + TSS region transcription start site region 45358
Gm42951 5 23330370 to 23347274 16904 - lincRNA gene predicted gene 42951
Gm17434 5 23330644 to 23339650 9006 + protein coding gene predicted gene, 17434
Gm43722 5 23376496 to 23376619 123 + pseudogene predicted gene 43722
5031425E22Rik 5 23382308 to 23434269 51961 - lincRNA gene RIKEN cDNA 5031425E22 gene
Tssr50259 5 23386475 to 23386499 24 - TSS region transcription start site region 50259
Tssr50260 5 23386885 to 23386924 39 - TSS region transcription start site region 50260
Cpgi15578 5 23386933 to 23387213 280 CpG island CpG island 15578
Tssr50261 5 23386984 to 23387016 32 - TSS region transcription start site region 50261
Tssr50262 5 23387033 to 23387061 28 - TSS region transcription start site region 50262
4930580E04Rik 5 23387109 to 23388601 1492 + lincRNA gene RIKEN cDNA 4930580E04 gene
Tssr45359 5 23387261 to 23387269 8 + TSS region transcription start site region 45359
Tssr45360 5 23387273 to 23387297 24 + TSS region transcription start site region 45360
Tssr45361 5 23387300 to 23387317 17 + TSS region transcription start site region 45361
Gm43058 5 23387620 to 23388244 624 - pseudogene predicted gene 43058
D5Jcs54 5 23389533 to 23389682 149 DNA segment DNA segment, Chr 5, John C. Schimenti 54
Gm42509 5 23396103 to 23396883 780 + unclassified gene predicted gene 42509
Gm46902 5 23399283 to 23402333 3050 - lncRNA gene predicted gene, 46902
Tssr50263 5 23402576 to 23402578 2 - TSS region transcription start site region 50263
Tssr50264 5 23403286 to 23403308 22 - TSS region transcription start site region 50264
2900022P04Rik 5 23404276 to 23405072 796 unclassified gene RIKEN cDNA 2900022P04 gene
Cpgi15579 5 23418250 to 23418720 470 CpG island CpG island 15579
Tssr50265 5 23418514 to 23418557 43 - TSS region transcription start site region 50265
Tssr45362 5 23418609 to 23418650 41 + TSS region transcription start site region 45362
Cpgi15580 5 23432671 to 23435386 2715 CpG island CpG island 15580
Tssr50266 5 23432709 to 23432727 18 - TSS region transcription start site region 50266
Tssr50267 5 23432750 to 23432779 29 - TSS region transcription start site region 50267
Tssr45363 5 23432823 to 23432828 5 + TSS region transcription start site region 45363
Tssr45364 5 23433083 to 23433131 48 + TSS region transcription start site region 45364
Tssr45365 5 23433152 to 23433163 11 + TSS region transcription start site region 45365
Tssr50268 5 23433277 to 23433293 16 - TSS region transcription start site region 50268
Tssr50269 5 23433305 to 23433344 39 - TSS region transcription start site region 50269
Tssr45366 5 23433441 to 23433531 90 + TSS region transcription start site region 45366
Tssr50270 5 23433866 to 23433880 14 - TSS region transcription start site region 50270
Tssr50271 5 23433913 to 23433931 18 - TSS region transcription start site region 50271
Tssr45367 5 23433934 to 23433950 16 + TSS region transcription start site region 45367
Tssr45368 5 23433953 to 23433979 26 + TSS region transcription start site region 45368
Tssr50272 5 23433953 to 23433963 10 - TSS region transcription start site region 50272
Tssr45369 5 23434091 to 23434130 39 + TSS region transcription start site region 45369
Tssr50273 5 23434224 to 23434236 12 - TSS region transcription start site region 50273
Tssr50274 5 23434307 to 23434359 52 - TSS region transcription start site region 50274
Tssr45370 5 23434435 to 23434471 36 + TSS region transcription start site region 45370
Kmt2e 5 23434441 to 23504235 69794 + protein coding gene lysine (K)-specific methyltransferase 2E
Tssr45371 5 23434502 to 23434513 11 + TSS region transcription start site region 45371
Tssr45372 5 23434535 to 23434554 19 + TSS region transcription start site region 45372
Tssr1436 5 23434578 to 23434587 9 + TSS region transcription start site region 1436
Tssr50275 5 23435253 to 23435264 11 - TSS region transcription start site region 50275
Tssr45373 5 23435379 to 23435396 17 + TSS region transcription start site region 45373
Tssr45374 5 23446702 to 23446708 6 + TSS region transcription start site region 45374
Tssr45375 5 23465136 to 23465148 12 + TSS region transcription start site region 45375
Tssr45376 5 23465218 to 23465233 15 + TSS region transcription start site region 45376
Tssr45377 5 23479046 to 23479049 3 + TSS region transcription start site region 45377
Tssr45378 5 23482417 to 23482432 15 + TSS region transcription start site region 45378
Tssr45379 5 23482464 to 23482479 15 + TSS region transcription start site region 45379
Tssr45380 5 23485333 to 23485345 12 + TSS region transcription start site region 45380
Tssr45381 5 23485354 to 23485367 13 + TSS region transcription start site region 45381
Gm25219 5 23487394 to 23487723 329 - unclassified non-coding RNA gene predicted gene, 25219
Tssr45382 5 23496079 to 23496095 16 + TSS region transcription start site region 45382
Tssr45383 5 23496108 to 23496137 29 + TSS region transcription start site region 45383
Tssr45384 5 23496399 to 23496417 18 + TSS region transcription start site region 45384
Tssr45385 5 23496422 to 23496435 13 + TSS region transcription start site region 45385
Tssr45386 5 23496498 to 23496519 21 + TSS region transcription start site region 45386
Tssr45387 5 23500447 to 23500462 15 + TSS region transcription start site region 45387
Tssr45388 5 23501559 to 23501574 15 + TSS region transcription start site region 45388
Tssr1437 5 23501591 to 23501608 17 + TSS region transcription start site region 1437
Tssr45389 5 23501953 to 23501968 15 + TSS region transcription start site region 45389
Tssr45390 5 23501998 to 23502017 19 + TSS region transcription start site region 45390
Tssr45391 5 23502085 to 23502105 20 + TSS region transcription start site region 45391
Tssr45392 5 23502936 to 23502970 34 + TSS region transcription start site region 45392
Srpk2 5 23503356 to 23684643 181287 - protein coding gene serine/arginine-rich protein specific kinase 2
Tssr50276 5 23506738 to 23506760 22 - TSS region transcription start site region 50276
Tssr50277 5 23507237 to 23507240 3 - TSS region transcription start site region 50277