Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:21890119-23400183

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Reln 5 21884454 to 22344702 460248 - protein coding gene reelin
Hmtb11 5 21895825 to 64649236 42753411 QTL hemostasis and thrombosis 11
Hmtb10 5 21895825 to 54342976 32447151 QTL hemostasis and thrombosis 10
Tssr45348 5 21901579 to 21901601 22 + TSS region transcription start site region 45348
Gm10475 5 21910931 to 21954014 43083 + antisense lncRNA gene predicted gene 10475
Dnaja1-ps 5 21951858 to 21952499 641 - pseudogene DnaJ heat shock protein family (Hsp40) member A1, pseudogene
Gm19666 5 21956094 to 21957986 1892 - unclassified non-coding RNA gene predicted gene, 19666
D5Mit72 5 22179522 to 22179654 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 72
Actd2 5 22179522 to 22179654 132 QTL activity-distance traveled 2
D5Mit227 5 22179552 to 22179647 95 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 227
Gm16113 5 22281211 to 22281582 371 - pseudogene predicted gene 16113
Gm16112 5 22292787 to 22293168 381 + pseudogene predicted gene 16112
Gm16110 5 22334442 to 22336118 1676 + antisense lncRNA gene predicted gene 16110
Cpgi15572 5 22343732 to 22345618 1886 CpG island CpG island 15572
Tssr50250 5 22344670 to 22344681 11 - TSS region transcription start site region 50250
Tssr50251 5 22344695 to 22344710 15 - TSS region transcription start site region 50251
Gm42223 5 22357305 to 22378534 21229 + lncRNA gene predicted gene, 42223
Gm25459 5 22359164 to 22359277 113 - snoRNA gene predicted gene, 25459
Gm43657 5 22400886 to 22404718 3832 - lincRNA gene predicted gene 43657
n-R5s170 5 22430331 to 22430443 112 - rRNA gene nuclear encoded rRNA 5S 170
Gm43110 5 22472767 to 22472992 225 - pseudogene predicted gene 43110
Cpgi15573 5 22472842 to 22473044 202 CpG island CpG island 15573
Orc5 5 22486484 to 22550361 63877 - protein coding gene origin recognition complex, subunit 5
Gm15421 5 22528221 to 22529030 809 - pseudogene predicted gene 15421
Tssr50252 5 22528710 to 22528715 5 - TSS region transcription start site region 50252
Tssr50253 5 22533276 to 22533297 21 - TSS region transcription start site region 50253
Gm22887 5 22534737 to 22534843 106 - snRNA gene predicted gene, 22887
Cpgi15574 5 22550079 to 22550565 486 CpG island CpG island 15574
Tssr50254 5 22550250 to 22550261 11 - TSS region transcription start site region 50254
Tssr50255 5 22550279 to 22550386 107 - TSS region transcription start site region 50255
Tssr45349 5 22550391 to 22550442 51 + TSS region transcription start site region 45349
6030443J06Rik 5 22550413 to 22558171 7758 + lincRNA gene RIKEN cDNA 6030443J06 gene
Cpgi15575 5 22552553 to 22552849 296 CpG island CpG island 15575
Gm42225 5 22561408 to 22590038 28630 - lncRNA gene predicted gene, 42225
Gm9057 5 22563957 to 22564252 295 + pseudogene predicted gene 9057
Tssr50256 5 22589652 to 22589670 18 - TSS region transcription start site region 50256
Rpl17-ps5 5 22612628 to 22613182 554 - pseudogene ribosomal protein L17, pseudogene 5
Tssr50257 5 22613221 to 22613235 14 - TSS region transcription start site region 50257
Gm24512 5 22645119 to 22645183 64 - snRNA gene predicted gene, 24512
Gm9523 5 22693561 to 22694719 1158 - pseudogene predicted gene 9523
Gm32711 5 22722850 to 22723957 1107 - pseudogene predicted gene, 32711
Gm6560 5 22724578 to 22726168 1590 - pseudogene predicted gene 6560
A930003O13Rik 5 22738910 to 22746884 7974 - lincRNA gene RIKEN cDNA A930003O13 gene
Gm44363 5 22739019 to 22739111 92 + miRNA gene predicted gene, 44363
Cpgi15576 5 22745630 to 22746830 1200 CpG island CpG island 15576
Tssr45350 5 22746017 to 22746083 66 + TSS region transcription start site region 45350
Lhfpl3 5 22746059 to 23275597 529538 + protein coding gene lipoma HMGIC fusion partner-like 3
Tssr45351 5 22746118 to 22746130 12 + TSS region transcription start site region 45351
Tssr45352 5 22746180 to 22746268 88 + TSS region transcription start site region 45352
Gm21846 5 22775630 to 22778702 3072 + lincRNA gene predicted gene, 21846
A930037G07Rik 5 22781339 to 22782250 911 unclassified gene RIKEN cDNA A930037G07 gene
Cpgi15577 5 22851612 to 22851796 184 CpG island CpG island 15577
Gm43169 5 22863812 to 22868545 4733 - unclassified gene predicted gene 43169
Tssr45353 5 22908333 to 22908359 26 + TSS region transcription start site region 45353
Gm6564 5 22931395 to 22932013 618 - pseudogene predicted pseudogene 6564
Tssr50258 5 22932066 to 22932076 10 - TSS region transcription start site region 50258
Tssr45354 5 22991075 to 22991076 1 + TSS region transcription start site region 45354
Gm11159 5 23052503 to 23058129 5626 unclassified gene predicted gene 11159
Tssr45355 5 23102377 to 23102387 10 + TSS region transcription start site region 45355
Tssr45356 5 23102389 to 23102413 24 + TSS region transcription start site region 45356
Gm3668 5 23143397 to 23145926 2529 + pseudogene predicted gene 3668
Gm42948 5 23200920 to 23223796 22876 - antisense lncRNA gene predicted gene 42948
Gm28022 5 23279866 to 23279911 45 - miRNA gene predicted gene, 28022
Tssr45357 5 23314322 to 23314333 11 + TSS region transcription start site region 45357
Tssr45358 5 23314346 to 23314356 10 + TSS region transcription start site region 45358
Gm42951 5 23330370 to 23347274 16904 - lincRNA gene predicted gene 42951
Gm17434 5 23330644 to 23339650 9006 + protein coding gene predicted gene, 17434
Gm43722 5 23376496 to 23376619 123 + pseudogene predicted gene 43722
5031425E22Rik 5 23382308 to 23434269 51961 - lincRNA gene RIKEN cDNA 5031425E22 gene
Tssr50259 5 23386475 to 23386499 24 - TSS region transcription start site region 50259
Tssr50260 5 23386885 to 23386924 39 - TSS region transcription start site region 50260
Cpgi15578 5 23386933 to 23387213 280 CpG island CpG island 15578
Tssr50261 5 23386984 to 23387016 32 - TSS region transcription start site region 50261
Tssr50262 5 23387033 to 23387061 28 - TSS region transcription start site region 50262
4930580E04Rik 5 23387109 to 23388601 1492 + lincRNA gene RIKEN cDNA 4930580E04 gene
Tssr45359 5 23387261 to 23387269 8 + TSS region transcription start site region 45359
Tssr45360 5 23387273 to 23387297 24 + TSS region transcription start site region 45360
Tssr45361 5 23387300 to 23387317 17 + TSS region transcription start site region 45361
Gm43058 5 23387620 to 23388244 624 - pseudogene predicted gene 43058
D5Jcs54 5 23389533 to 23389682 149 DNA segment DNA segment, Chr 5, John C. Schimenti 54
Gm42509 5 23396103 to 23396883 780 + unclassified gene predicted gene 42509
Gm46902 5 23399283 to 23402333 3050 - lncRNA gene predicted gene, 46902