Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:21854535-25014554

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434 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc26a5 5 21810655 to 21865604 54949 - protein coding gene solute carrier family 26, member 5
D5Mit61 5 21862445 to 21862543 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 61
D5Buc45 5 21862952 to 21863225 273 DNA segment DNA segment, Chr 5, Bucan 45
Cpgi15571 5 21865428 to 21865818 390 CpG island CpG island 15571
Tssr50249 5 21865606 to 21865617 11 - TSS region transcription start site region 50249
Reln 5 21884454 to 22344702 460248 - protein coding gene reelin
Gm16111 5 21889780 to 21890064 284 + pseudogene predicted gene 16111
Hmtb10 5 21895825 to 54342976 32447151 QTL hemostasis and thrombosis 10
Hmtb11 5 21895825 to 64649236 42753411 QTL hemostasis and thrombosis 11
Tssr45348 5 21901579 to 21901601 22 + TSS region transcription start site region 45348
Gm10475 5 21910931 to 21954014 43083 + antisense lncRNA gene predicted gene 10475
Dnaja1-ps 5 21951858 to 21952499 641 - pseudogene DnaJ heat shock protein family (Hsp40) member A1, pseudogene
Gm19666 5 21956094 to 21957986 1892 - unclassified non-coding RNA gene predicted gene, 19666
D5Mit72 5 22179522 to 22179654 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 72
Actd2 5 22179522 to 22179654 132 QTL activity-distance traveled 2
D5Mit227 5 22179552 to 22179647 95 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 227
Gm16113 5 22281211 to 22281582 371 - pseudogene predicted gene 16113
Gm16112 5 22292787 to 22293168 381 + pseudogene predicted gene 16112
Gm16110 5 22334442 to 22336118 1676 + antisense lncRNA gene predicted gene 16110
Cpgi15572 5 22343732 to 22345618 1886 CpG island CpG island 15572
Tssr50250 5 22344670 to 22344681 11 - TSS region transcription start site region 50250
Tssr50251 5 22344695 to 22344710 15 - TSS region transcription start site region 50251
Gm42223 5 22357305 to 22378534 21229 + lncRNA gene predicted gene, 42223
Gm25459 5 22359164 to 22359277 113 - snoRNA gene predicted gene, 25459
Gm43657 5 22400886 to 22404718 3832 - lincRNA gene predicted gene 43657
n-R5s170 5 22430331 to 22430443 112 - rRNA gene nuclear encoded rRNA 5S 170
Gm43110 5 22472767 to 22472992 225 - pseudogene predicted gene 43110
Cpgi15573 5 22472842 to 22473044 202 CpG island CpG island 15573
Orc5 5 22486484 to 22550361 63877 - protein coding gene origin recognition complex, subunit 5
Gm15421 5 22528221 to 22529030 809 - pseudogene predicted gene 15421
Tssr50252 5 22528710 to 22528715 5 - TSS region transcription start site region 50252
Tssr50253 5 22533276 to 22533297 21 - TSS region transcription start site region 50253
Gm22887 5 22534737 to 22534843 106 - snRNA gene predicted gene, 22887
Cpgi15574 5 22550079 to 22550565 486 CpG island CpG island 15574
Tssr50254 5 22550250 to 22550261 11 - TSS region transcription start site region 50254
Tssr50255 5 22550279 to 22550386 107 - TSS region transcription start site region 50255
Tssr45349 5 22550391 to 22550442 51 + TSS region transcription start site region 45349
6030443J06Rik 5 22550413 to 22558171 7758 + lincRNA gene RIKEN cDNA 6030443J06 gene
Cpgi15575 5 22552553 to 22552849 296 CpG island CpG island 15575
Gm42225 5 22561408 to 22590038 28630 - lncRNA gene predicted gene, 42225
Gm9057 5 22563957 to 22564252 295 + pseudogene predicted gene 9057
Tssr50256 5 22589652 to 22589670 18 - TSS region transcription start site region 50256
Rpl17-ps5 5 22612628 to 22613182 554 - pseudogene ribosomal protein L17, pseudogene 5
Tssr50257 5 22613221 to 22613235 14 - TSS region transcription start site region 50257
Gm24512 5 22645119 to 22645183 64 - snRNA gene predicted gene, 24512
Gm9523 5 22693561 to 22694719 1158 - pseudogene predicted gene 9523
Gm32711 5 22722850 to 22723957 1107 - pseudogene predicted gene, 32711
Gm6560 5 22724578 to 22726168 1590 - pseudogene predicted gene 6560
A930003O13Rik 5 22738910 to 22746884 7974 - lincRNA gene RIKEN cDNA A930003O13 gene
Gm44363 5 22739019 to 22739111 92 + miRNA gene predicted gene, 44363
Cpgi15576 5 22745630 to 22746830 1200 CpG island CpG island 15576
Tssr45350 5 22746017 to 22746083 66 + TSS region transcription start site region 45350
Lhfpl3 5 22746059 to 23275597 529538 + protein coding gene lipoma HMGIC fusion partner-like 3
Tssr45351 5 22746118 to 22746130 12 + TSS region transcription start site region 45351
Tssr45352 5 22746180 to 22746268 88 + TSS region transcription start site region 45352
Gm21846 5 22775630 to 22778702 3072 + lincRNA gene predicted gene, 21846
A930037G07Rik 5 22781339 to 22782250 911 unclassified gene RIKEN cDNA A930037G07 gene
Cpgi15577 5 22851612 to 22851796 184 CpG island CpG island 15577
Gm43169 5 22863812 to 22868545 4733 - unclassified gene predicted gene 43169
Tssr45353 5 22908333 to 22908359 26 + TSS region transcription start site region 45353
Gm6564 5 22931395 to 22932013 618 - pseudogene predicted pseudogene 6564
Tssr50258 5 22932066 to 22932076 10 - TSS region transcription start site region 50258
Tssr45354 5 22991075 to 22991076 1 + TSS region transcription start site region 45354
Gm11159 5 23052503 to 23058129 5626 unclassified gene predicted gene 11159
Tssr45355 5 23102377 to 23102387 10 + TSS region transcription start site region 45355
Tssr45356 5 23102389 to 23102413 24 + TSS region transcription start site region 45356
Gm3668 5 23143397 to 23145926 2529 + pseudogene predicted gene 3668
Gm42948 5 23200920 to 23223796 22876 - antisense lncRNA gene predicted gene 42948
Gm28022 5 23279866 to 23279911 45 - miRNA gene predicted gene, 28022
Tssr45357 5 23314322 to 23314333 11 + TSS region transcription start site region 45357
Tssr45358 5 23314346 to 23314356 10 + TSS region transcription start site region 45358
Gm42951 5 23330370 to 23347274 16904 - lincRNA gene predicted gene 42951
Gm17434 5 23330644 to 23339650 9006 + protein coding gene predicted gene, 17434
Gm43722 5 23376496 to 23376619 123 + pseudogene predicted gene 43722
5031425E22Rik 5 23382308 to 23434269 51961 - lincRNA gene RIKEN cDNA 5031425E22 gene
Tssr50259 5 23386475 to 23386499 24 - TSS region transcription start site region 50259
Tssr50260 5 23386885 to 23386924 39 - TSS region transcription start site region 50260
Cpgi15578 5 23386933 to 23387213 280 CpG island CpG island 15578
Tssr50261 5 23386984 to 23387016 32 - TSS region transcription start site region 50261
Tssr50262 5 23387033 to 23387061 28 - TSS region transcription start site region 50262
4930580E04Rik 5 23387109 to 23388601 1492 + lincRNA gene RIKEN cDNA 4930580E04 gene
Tssr45359 5 23387261 to 23387269 8 + TSS region transcription start site region 45359
Tssr45360 5 23387273 to 23387297 24 + TSS region transcription start site region 45360
Tssr45361 5 23387300 to 23387317 17 + TSS region transcription start site region 45361
Gm43058 5 23387620 to 23388244 624 - pseudogene predicted gene 43058
D5Jcs54 5 23389533 to 23389682 149 DNA segment DNA segment, Chr 5, John C. Schimenti 54
Gm42509 5 23396103 to 23396883 780 + unclassified gene predicted gene 42509
Gm46902 5 23399283 to 23402333 3050 - lncRNA gene predicted gene, 46902
Tssr50263 5 23402576 to 23402578 2 - TSS region transcription start site region 50263
Tssr50264 5 23403286 to 23403308 22 - TSS region transcription start site region 50264
2900022P04Rik 5 23404276 to 23405072 796 unclassified gene RIKEN cDNA 2900022P04 gene
Cpgi15579 5 23418250 to 23418720 470 CpG island CpG island 15579
Tssr50265 5 23418514 to 23418557 43 - TSS region transcription start site region 50265
Tssr45362 5 23418609 to 23418650 41 + TSS region transcription start site region 45362
Cpgi15580 5 23432671 to 23435386 2715 CpG island CpG island 15580
Tssr50266 5 23432709 to 23432727 18 - TSS region transcription start site region 50266
Tssr50267 5 23432750 to 23432779 29 - TSS region transcription start site region 50267
Tssr45363 5 23432823 to 23432828 5 + TSS region transcription start site region 45363
Tssr45364 5 23433083 to 23433131 48 + TSS region transcription start site region 45364
Tssr45365 5 23433152 to 23433163 11 + TSS region transcription start site region 45365
Tssr50268 5 23433277 to 23433293 16 - TSS region transcription start site region 50268
Tssr50269 5 23433305 to 23433344 39 - TSS region transcription start site region 50269
Tssr45366 5 23433441 to 23433531 90 + TSS region transcription start site region 45366
Tssr50270 5 23433866 to 23433880 14 - TSS region transcription start site region 50270
Tssr50271 5 23433913 to 23433931 18 - TSS region transcription start site region 50271
Tssr45367 5 23433934 to 23433950 16 + TSS region transcription start site region 45367
Tssr45368 5 23433953 to 23433979 26 + TSS region transcription start site region 45368
Tssr50272 5 23433953 to 23433963 10 - TSS region transcription start site region 50272
Tssr45369 5 23434091 to 23434130 39 + TSS region transcription start site region 45369
Tssr50273 5 23434224 to 23434236 12 - TSS region transcription start site region 50273
Tssr50274 5 23434307 to 23434359 52 - TSS region transcription start site region 50274
Tssr45370 5 23434435 to 23434471 36 + TSS region transcription start site region 45370
Kmt2e 5 23434441 to 23504235 69794 + protein coding gene lysine (K)-specific methyltransferase 2E
Tssr45371 5 23434502 to 23434513 11 + TSS region transcription start site region 45371
Tssr45372 5 23434535 to 23434554 19 + TSS region transcription start site region 45372
Tssr1436 5 23434578 to 23434587 9 + TSS region transcription start site region 1436
Tssr50275 5 23435253 to 23435264 11 - TSS region transcription start site region 50275
Tssr45373 5 23435379 to 23435396 17 + TSS region transcription start site region 45373
Tssr45374 5 23446702 to 23446708 6 + TSS region transcription start site region 45374
Tssr45375 5 23465136 to 23465148 12 + TSS region transcription start site region 45375
Tssr45376 5 23465218 to 23465233 15 + TSS region transcription start site region 45376
Tssr45377 5 23479046 to 23479049 3 + TSS region transcription start site region 45377
Tssr45378 5 23482417 to 23482432 15 + TSS region transcription start site region 45378
Tssr45379 5 23482464 to 23482479 15 + TSS region transcription start site region 45379
Tssr45380 5 23485333 to 23485345 12 + TSS region transcription start site region 45380
Tssr45381 5 23485354 to 23485367 13 + TSS region transcription start site region 45381
Gm25219 5 23487394 to 23487723 329 - unclassified non-coding RNA gene predicted gene, 25219
Tssr45382 5 23496079 to 23496095 16 + TSS region transcription start site region 45382
Tssr45383 5 23496108 to 23496137 29 + TSS region transcription start site region 45383
Tssr45384 5 23496399 to 23496417 18 + TSS region transcription start site region 45384
Tssr45385 5 23496422 to 23496435 13 + TSS region transcription start site region 45385
Tssr45386 5 23496498 to 23496519 21 + TSS region transcription start site region 45386
Tssr45387 5 23500447 to 23500462 15 + TSS region transcription start site region 45387
Tssr45388 5 23501559 to 23501574 15 + TSS region transcription start site region 45388
Tssr1437 5 23501591 to 23501608 17 + TSS region transcription start site region 1437
Tssr45389 5 23501953 to 23501968 15 + TSS region transcription start site region 45389
Tssr45390 5 23501998 to 23502017 19 + TSS region transcription start site region 45390
Tssr45391 5 23502085 to 23502105 20 + TSS region transcription start site region 45391
Tssr45392 5 23502936 to 23502970 34 + TSS region transcription start site region 45392
Srpk2 5 23503356 to 23684643 181287 - protein coding gene serine/arginine-rich protein specific kinase 2
Tssr50276 5 23506738 to 23506760 22 - TSS region transcription start site region 50276
Tssr50277 5 23507237 to 23507240 3 - TSS region transcription start site region 50277
Tssr50278 5 23518725 to 23518757 32 - TSS region transcription start site region 50278
Tssr50279 5 23518795 to 23518809 14 - TSS region transcription start site region 50279
Tssr50280 5 23586620 to 23586627 7 - TSS region transcription start site region 50280
Tssr1438 5 23586794 to 23586832 38 + TSS region transcription start site region 1438
Tssr45393 5 23598279 to 23598284 5 + TSS region transcription start site region 45393
Tssr50281 5 23616528 to 23616597 69 - TSS region transcription start site region 50281
Tssr50282 5 23669164 to 23669167 3 - TSS region transcription start site region 50282
Gm24009 5 23674289 to 23674381 92 - rRNA gene predicted gene, 24009
Gm43566 5 23674739 to 23675546 807 - sense intronic lncRNA gene predicted gene 43566
Cpgi15581 5 23674813 to 23676519 1706 CpG island CpG island 15581
Tssr50283 5 23675789 to 23675802 13 - TSS region transcription start site region 50283
Tssr50284 5 23675814 to 23675838 24 - TSS region transcription start site region 50284
Tssr50285 5 23675927 to 23675938 11 - TSS region transcription start site region 50285
Tssr50286 5 23675941 to 23675997 56 - TSS region transcription start site region 50286
Tssr45394 5 23676114 to 23676129 15 + TSS region transcription start site region 45394
Tssr50287 5 23676434 to 23676489 55 - TSS region transcription start site region 50287
Tssr50288 5 23684583 to 23684586 3 - TSS region transcription start site region 50288
Tssr50289 5 23684593 to 23684602 9 - TSS region transcription start site region 50289
Tssr50290 5 23684608 to 23684636 28 - TSS region transcription start site region 50290
Tssr50291 5 23684647 to 23684652 5 - TSS region transcription start site region 50291
AI506816 5 23698296 to 23712667 14371 - lncRNA gene expressed sequence AI506816
Gm29779 5 23701126 to 23703111 1985 - protein coding gene predicted gene, 29779
Gm42226 5 23703215 to 23705658 2443 - protein coding gene predicted gene, 42226
Mir3096 5 23710991 to 23711061 70 - miRNA gene microRNA 3096
Cpgi15582 5 23712230 to 23712942 712 CpG island CpG island 15582
Tssr50292 5 23712661 to 23712691 30 - TSS region transcription start site region 50292
Tssr50293 5 23712853 to 23712887 34 - TSS region transcription start site region 50293
Pus7 5 23740648 to 23783711 43063 - protein coding gene pseudouridylate synthase 7
Cpgi15583 5 23782927 to 23783827 900 CpG island CpG island 15583
Tssr50294 5 23783612 to 23783697 85 - TSS region transcription start site region 50294
Tssr50295 5 23783700 to 23783709 9 - TSS region transcription start site region 50295
Cpgi15584 5 23787562 to 23788327 765 CpG island CpG island 15584
Tssr45395 5 23787691 to 23787751 60 + TSS region transcription start site region 45395
Rint1 5 23787711 to 23820369 32658 + protein coding gene RAD50 interactor 1
Tssr45396 5 23787757 to 23787774 17 + TSS region transcription start site region 45396
Gm43054 5 23790702 to 23791585 883 + unclassified gene predicted gene 43054
4933427G23Rik 5 23830133 to 23832436 2303 - pseudogene RIKEN cDNA 4933427G23 gene
Cpgi15585 5 23831073 to 23831794 721 CpG island CpG island 15585
Gm22054 5 23836167 to 23836321 154 - snRNA gene predicted gene, 22054
Tomm7 5 23838944 to 23844145 5201 - protein coding gene translocase of outer mitochondrial membrane 7
Cpgi15586 5 23844016 to 23844448 432 CpG island CpG island 15586
Tssr50296 5 23844085 to 23844151 66 - TSS region transcription start site region 50296
Gm42228 5 23849454 to 23852770 3316 - lncRNA gene predicted gene, 42228
Cpgi15587 5 23850374 to 23851024 650 CpG island CpG island 15587
Tssr45397 5 23850575 to 23850589 14 + TSS region transcription start site region 45397
Tssr45398 5 23850590 to 23850607 17 + TSS region transcription start site region 45398
2700038G22Rik 5 23850597 to 23855033 4436 + lincRNA gene RIKEN cDNA 2700038G22 gene
Snord93 5 23852233 to 23852277 44 + snoRNA gene small nucleolar RNA, C/D box 93
Gm9534 5 23863248 to 23892647 29399 - pseudogene predicted gene 9534
Tssr50297 5 23871360 to 23871365 5 - TSS region transcription start site region 50297
D5Jcs55 5 23894739 to 23894881 142 DNA segment DNA segment, Chr 5, John C. Schimenti 55
Fam126a 5 23915276 to 24030690 115414 - protein coding gene family with sequence similarity 126, member A
Tssr50298 5 23922660 to 23922694 34 - TSS region transcription start site region 50298
Tssr50299 5 23922914 to 23922929 15 - TSS region transcription start site region 50299
Gm6745 5 24009887 to 24010412 525 - pseudogene predicted gene 6745
Cpgi15588 5 24029681 to 24030939 1258 CpG island CpG island 15588
Tssr50300 5 24030297 to 24030319 22 - TSS region transcription start site region 50300
Tssr50301 5 24030626 to 24030646 20 - TSS region transcription start site region 50301