Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:21744552-22614647

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pmpcb 5 21737160 to 21757152 19992 + protein coding gene peptidase (mitochondrial processing) beta
Gm15715 5 21748231 to 21748513 282 - pseudogene predicted gene 15715
Dnajc2 5 21757273 to 21785249 27976 - protein coding gene DnaJ heat shock protein family (Hsp40) member C2
Tssr50245 5 21768465 to 21768496 31 - TSS region transcription start site region 50245
Tssr50246 5 21773817 to 21773831 14 - TSS region transcription start site region 50246
Cpgi15569 5 21784417 to 21785340 923 CpG island CpG island 15569
Tssr50247 5 21785093 to 21785098 5 - TSS region transcription start site region 50247
Tssr50248 5 21785115 to 21785232 117 - TSS region transcription start site region 50248
Tssr45344 5 21785253 to 21785301 48 + TSS region transcription start site region 45344
Psmc2 5 21785283 to 21803784 18501 + protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase 2
Cpgi15570 5 21786400 to 21787148 748 CpG island CpG island 15570
Tssr45345 5 21786739 to 21786784 45 + TSS region transcription start site region 45345
Tssr45346 5 21786791 to 21786804 13 + TSS region transcription start site region 45346
Tssr45347 5 21790606 to 21790607 1 + TSS region transcription start site region 45347
Slc26a5 5 21810655 to 21865604 54949 - protein coding gene solute carrier family 26, member 5
D5Mit61 5 21862445 to 21862543 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 61
D5Buc45 5 21862952 to 21863225 273 DNA segment DNA segment, Chr 5, Bucan 45
Cpgi15571 5 21865428 to 21865818 390 CpG island CpG island 15571
Tssr50249 5 21865606 to 21865617 11 - TSS region transcription start site region 50249
Reln 5 21884454 to 22344702 460248 - protein coding gene reelin
Gm16111 5 21889780 to 21890064 284 + pseudogene predicted gene 16111
Hmtb11 5 21895825 to 64649236 42753411 QTL hemostasis and thrombosis 11
Hmtb10 5 21895825 to 54342976 32447151 QTL hemostasis and thrombosis 10
Tssr45348 5 21901579 to 21901601 22 + TSS region transcription start site region 45348
Gm10475 5 21910931 to 21954014 43083 + antisense lncRNA gene predicted gene 10475
Dnaja1-ps 5 21951858 to 21952499 641 - pseudogene DnaJ heat shock protein family (Hsp40) member A1, pseudogene
Gm19666 5 21956094 to 21957986 1892 - unclassified non-coding RNA gene predicted gene, 19666
D5Mit72 5 22179522 to 22179654 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 72
Actd2 5 22179522 to 22179654 132 QTL activity-distance traveled 2
D5Mit227 5 22179552 to 22179647 95 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 227
Gm16113 5 22281211 to 22281582 371 - pseudogene predicted gene 16113
Gm16112 5 22292787 to 22293168 381 + pseudogene predicted gene 16112
Gm16110 5 22334442 to 22336118 1676 + antisense lncRNA gene predicted gene 16110
Cpgi15572 5 22343732 to 22345618 1886 CpG island CpG island 15572
Tssr50250 5 22344670 to 22344681 11 - TSS region transcription start site region 50250
Tssr50251 5 22344695 to 22344710 15 - TSS region transcription start site region 50251
Gm42223 5 22357305 to 22378534 21229 + lncRNA gene predicted gene, 42223
Gm25459 5 22359164 to 22359277 113 - snoRNA gene predicted gene, 25459
Gm43657 5 22400886 to 22404718 3832 - lincRNA gene predicted gene 43657
n-R5s170 5 22430331 to 22430443 112 - rRNA gene nuclear encoded rRNA 5S 170
Gm43110 5 22472767 to 22472992 225 - pseudogene predicted gene 43110
Cpgi15573 5 22472842 to 22473044 202 CpG island CpG island 15573
Orc5 5 22486484 to 22550361 63877 - protein coding gene origin recognition complex, subunit 5
Gm15421 5 22528221 to 22529030 809 - pseudogene predicted gene 15421
Tssr50252 5 22528710 to 22528715 5 - TSS region transcription start site region 50252
Tssr50253 5 22533276 to 22533297 21 - TSS region transcription start site region 50253
Gm22887 5 22534737 to 22534843 106 - snRNA gene predicted gene, 22887
Cpgi15574 5 22550079 to 22550565 486 CpG island CpG island 15574
Tssr50254 5 22550250 to 22550261 11 - TSS region transcription start site region 50254
Tssr50255 5 22550279 to 22550386 107 - TSS region transcription start site region 50255
Tssr45349 5 22550391 to 22550442 51 + TSS region transcription start site region 45349
6030443J06Rik 5 22550413 to 22558171 7758 + lincRNA gene RIKEN cDNA 6030443J06 gene
Cpgi15575 5 22552553 to 22552849 296 CpG island CpG island 15575
Gm42225 5 22561408 to 22590038 28630 - lncRNA gene predicted gene, 42225
Gm9057 5 22563957 to 22564252 295 + pseudogene predicted gene 9057
Tssr50256 5 22589652 to 22589670 18 - TSS region transcription start site region 50256
Rpl17-ps5 5 22612628 to 22613182 554 - pseudogene ribosomal protein L17, pseudogene 5
Tssr50257 5 22613221 to 22613235 14 - TSS region transcription start site region 50257