Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:21379454-22849702

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc146 5 21292961 to 21424677 131716 - protein coding gene coiled-coil domain containing 146
Tssr45330 5 21381228 to 21381278 50 + TSS region transcription start site region 45330
Tssr50232 5 21424641 to 21424659 18 - TSS region transcription start site region 50232
Tssr50233 5 21424664 to 21424686 22 - TSS region transcription start site region 50233
Tssr50234 5 21424692 to 21424703 11 - TSS region transcription start site region 50234
Tssr45331 5 21424865 to 21424891 26 + TSS region transcription start site region 45331
Cpgi15563 5 21424878 to 21425672 794 CpG island CpG island 15563
Tssr45332 5 21424934 to 21425013 79 + TSS region transcription start site region 45332
Fam185a 5 21424958 to 21482124 57166 + protein coding gene family with sequence similarity 185, member A
Tssr45333 5 21425038 to 21425063 25 + TSS region transcription start site region 45333
D5Nam1 5 21452511 to 21452592 81 DNA segment DNA segment, Chr 5, Notre-Dame de la Paix 1
Tssr45334 5 21475197 to 21475201 4 + TSS region transcription start site region 45334
Fbxl13 5 21483847 to 21645634 161787 - protein coding gene F-box and leucine-rich repeat protein 13
Tssr45335 5 21543485 to 21543496 11 + TSS region transcription start site region 45335
Tssr45336 5 21543504 to 21543521 17 + TSS region transcription start site region 45336
Tssr45337 5 21543525 to 21543590 65 + TSS region transcription start site region 45337
Lrrc17 5 21543559 to 21575904 32345 + protein coding gene leucine rich repeat containing 17
Tssr45338 5 21543593 to 21543612 19 + TSS region transcription start site region 45338
Tssr45339 5 21543617 to 21543638 21 + TSS region transcription start site region 45339
Cpgi15564 5 21597690 to 21597912 222 CpG island CpG island 15564
Gm6543 5 21598740 to 21599547 807 + pseudogene predicted gene 6543
Gm8539 5 21613994 to 21614494 500 - pseudogene predicted gene 8539
Tssr50235 5 21645526 to 21645527 1 - TSS region transcription start site region 50235
Tssr50236 5 21645541 to 21645610 69 - TSS region transcription start site region 50236
Tssr50237 5 21645621 to 21645627 6 - TSS region transcription start site region 50237
Cpgi15565 5 21645622 to 21646382 760 CpG island CpG island 15565
Tssr45340 5 21645855 to 21645885 30 + TSS region transcription start site region 45340
Tssr45341 5 21645978 to 21646032 54 + TSS region transcription start site region 45341
Armc10 5 21645984 to 21662592 16608 + protein coding gene armadillo repeat containing 10
Tssr45342 5 21646033 to 21646057 24 + TSS region transcription start site region 45342
Napepld 5 21662901 to 21701396 38495 - protein coding gene N-acyl phosphatidylethanolamine phospholipase D
Tssr50238 5 21664888 to 21664919 31 - TSS region transcription start site region 50238
Tssr50239 5 21664963 to 21664974 11 - TSS region transcription start site region 50239
Tssr50240 5 21665061 to 21665084 23 - TSS region transcription start site region 50240
Tssr50241 5 21665264 to 21665279 15 - TSS region transcription start site region 50241
Tssr50242 5 21665287 to 21665303 16 - TSS region transcription start site region 50242
Cpgi15566 5 21675325 to 21676088 763 CpG island CpG island 15566
Gm15719 5 21689557 to 21690175 618 + pseudogene predicted gene 15719
9530071P10Rik 5 21696281 to 21697594 1313 unclassified gene RIKEN cDNA 9530071P10 gene
Cpgi15567 5 21700966 to 21702005 1039 CpG island CpG island 15567
Tssr50243 5 21701332 to 21701404 72 - TSS region transcription start site region 50243
Tssr50244 5 21701525 to 21701535 10 - TSS region transcription start site region 50244
Cpgi15568 5 21736948 to 21737726 778 CpG island CpG island 15568
Tssr45343 5 21737142 to 21737179 37 + TSS region transcription start site region 45343
Pmpcb 5 21737160 to 21757152 19992 + protein coding gene peptidase (mitochondrial processing) beta
Gm15715 5 21748231 to 21748513 282 - pseudogene predicted gene 15715
Dnajc2 5 21757273 to 21785249 27976 - protein coding gene DnaJ heat shock protein family (Hsp40) member C2
Tssr50245 5 21768465 to 21768496 31 - TSS region transcription start site region 50245
Tssr50246 5 21773817 to 21773831 14 - TSS region transcription start site region 50246
Cpgi15569 5 21784417 to 21785340 923 CpG island CpG island 15569
Tssr50247 5 21785093 to 21785098 5 - TSS region transcription start site region 50247
Tssr50248 5 21785115 to 21785232 117 - TSS region transcription start site region 50248
Tssr45344 5 21785253 to 21785301 48 + TSS region transcription start site region 45344
Psmc2 5 21785283 to 21803784 18501 + protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase 2
Cpgi15570 5 21786400 to 21787148 748 CpG island CpG island 15570
Tssr45345 5 21786739 to 21786784 45 + TSS region transcription start site region 45345
Tssr45346 5 21786791 to 21786804 13 + TSS region transcription start site region 45346
Tssr45347 5 21790606 to 21790607 1 + TSS region transcription start site region 45347
Slc26a5 5 21810655 to 21865604 54949 - protein coding gene solute carrier family 26, member 5
D5Mit61 5 21862445 to 21862543 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 61
D5Buc45 5 21862952 to 21863225 273 DNA segment DNA segment, Chr 5, Bucan 45
Cpgi15571 5 21865428 to 21865818 390 CpG island CpG island 15571
Tssr50249 5 21865606 to 21865617 11 - TSS region transcription start site region 50249
Reln 5 21884454 to 22344702 460248 - protein coding gene reelin
Gm16111 5 21889780 to 21890064 284 + pseudogene predicted gene 16111
Hmtb11 5 21895825 to 64649236 42753411 QTL hemostasis and thrombosis 11
Hmtb10 5 21895825 to 54342976 32447151 QTL hemostasis and thrombosis 10
Tssr45348 5 21901579 to 21901601 22 + TSS region transcription start site region 45348
Gm10475 5 21910931 to 21954014 43083 + antisense lncRNA gene predicted gene 10475
Dnaja1-ps 5 21951858 to 21952499 641 - pseudogene DnaJ heat shock protein family (Hsp40) member A1, pseudogene
Gm19666 5 21956094 to 21957986 1892 - unclassified non-coding RNA gene predicted gene, 19666
Actd2 5 22179522 to 22179654 132 QTL activity-distance traveled 2
D5Mit72 5 22179522 to 22179654 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 72
D5Mit227 5 22179552 to 22179647 95 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 227
Gm16113 5 22281211 to 22281582 371 - pseudogene predicted gene 16113
Gm16112 5 22292787 to 22293168 381 + pseudogene predicted gene 16112
Gm16110 5 22334442 to 22336118 1676 + antisense lncRNA gene predicted gene 16110
Cpgi15572 5 22343732 to 22345618 1886 CpG island CpG island 15572
Tssr50250 5 22344670 to 22344681 11 - TSS region transcription start site region 50250
Tssr50251 5 22344695 to 22344710 15 - TSS region transcription start site region 50251
Gm42223 5 22357305 to 22378534 21229 + lncRNA gene predicted gene, 42223
Gm25459 5 22359164 to 22359277 113 - snoRNA gene predicted gene, 25459
Gm43657 5 22400886 to 22404718 3832 - lincRNA gene predicted gene 43657
n-R5s170 5 22430331 to 22430443 112 - rRNA gene nuclear encoded rRNA 5S 170
Gm43110 5 22472767 to 22472992 225 - pseudogene predicted gene 43110
Cpgi15573 5 22472842 to 22473044 202 CpG island CpG island 15573
Orc5 5 22486484 to 22550361 63877 - protein coding gene origin recognition complex, subunit 5
Gm15421 5 22528221 to 22529030 809 - pseudogene predicted gene 15421
Tssr50252 5 22528710 to 22528715 5 - TSS region transcription start site region 50252
Tssr50253 5 22533276 to 22533297 21 - TSS region transcription start site region 50253
Gm22887 5 22534737 to 22534843 106 - snRNA gene predicted gene, 22887
Cpgi15574 5 22550079 to 22550565 486 CpG island CpG island 15574
Tssr50254 5 22550250 to 22550261 11 - TSS region transcription start site region 50254
Tssr50255 5 22550279 to 22550386 107 - TSS region transcription start site region 50255
Tssr45349 5 22550391 to 22550442 51 + TSS region transcription start site region 45349
6030443J06Rik 5 22550413 to 22558171 7758 + lincRNA gene RIKEN cDNA 6030443J06 gene
Cpgi15575 5 22552553 to 22552849 296 CpG island CpG island 15575
Gm42225 5 22561408 to 22590038 28630 - lncRNA gene predicted gene, 42225
Gm9057 5 22563957 to 22564252 295 + pseudogene predicted gene 9057
Tssr50256 5 22589652 to 22589670 18 - TSS region transcription start site region 50256
Rpl17-ps5 5 22612628 to 22613182 554 - pseudogene ribosomal protein L17, pseudogene 5
Tssr50257 5 22613221 to 22613235 14 - TSS region transcription start site region 50257
Gm24512 5 22645119 to 22645183 64 - snRNA gene predicted gene, 24512
Gm9523 5 22693561 to 22694719 1158 - pseudogene predicted gene 9523
Gm32711 5 22722850 to 22723957 1107 - pseudogene predicted gene, 32711
Gm6560 5 22724578 to 22726168 1590 - pseudogene predicted gene 6560
A930003O13Rik 5 22738910 to 22746884 7974 - lincRNA gene RIKEN cDNA A930003O13 gene
Gm44363 5 22739019 to 22739111 92 + miRNA gene predicted gene, 44363
Cpgi15576 5 22745630 to 22746830 1200 CpG island CpG island 15576
Tssr45350 5 22746017 to 22746083 66 + TSS region transcription start site region 45350
Lhfpl3 5 22746059 to 23275597 529538 + protein coding gene lipoma HMGIC fusion partner-like 3
Tssr45351 5 22746118 to 22746130 12 + TSS region transcription start site region 45351
Tssr45352 5 22746180 to 22746268 88 + TSS region transcription start site region 45352
Gm21846 5 22775630 to 22778702 3072 + lincRNA gene predicted gene, 21846
A930037G07Rik 5 22781339 to 22782250 911 unclassified gene RIKEN cDNA A930037G07 gene