Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:20930035-21180046

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rsbn1l 5 20892290 to 20952147 59857 - protein coding gene round spermatid basic protein 1-like
Tssr50220 5 20945430 to 20945445 15 - TSS region transcription start site region 50220
Tssr50221 5 20945482 to 20945530 48 - TSS region transcription start site region 50221
Tssr50222 5 20945534 to 20945546 12 - TSS region transcription start site region 50222
Tssr45281 5 20945597 to 20945640 43 + TSS region transcription start site region 45281
Tssr45282 5 20950771 to 20950775 4 + TSS region transcription start site region 45282
Cpgi15559 5 20950805 to 20952146 1341 CpG island CpG island 15559
Tssr45283 5 20950930 to 20950950 20 + TSS region transcription start site region 45283
Tssr45284 5 20950956 to 20950972 16 + TSS region transcription start site region 45284
Tssr45285 5 20950983 to 20950994 11 + TSS region transcription start site region 45285
A630072M18Rik 5 20950989 to 20956398 5409 + antisense lncRNA gene RIKEN cDNA A630072M18 gene
Tssr45286 5 20951034 to 20951045 11 + TSS region transcription start site region 45286
Tssr45287 5 20951171 to 20951195 24 + TSS region transcription start site region 45287
Tssr50223 5 20951769 to 20951824 55 - TSS region transcription start site region 50223
Tssr45288 5 20951960 to 20951992 32 + TSS region transcription start site region 45288
Ptpn12 5 20986645 to 21055911 69266 - protein coding gene protein tyrosine phosphatase, non-receptor type 12
Tssr50224 5 20991986 to 20991995 9 - TSS region transcription start site region 50224
Tssr50225 5 21002834 to 21002847 13 - TSS region transcription start site region 50225
Tssr50226 5 21008638 to 21008644 6 - TSS region transcription start site region 50226
Gm43216 5 21031752 to 21033084 1332 + unclassified gene predicted gene 43216
Cpgi15560 5 21054586 to 21056496 1910 CpG island CpG island 15560
Tssr45289 5 21054982 to 21054996 14 + TSS region transcription start site region 45289
Tssr45290 5 21055035 to 21055046 11 + TSS region transcription start site region 45290
Tssr50227 5 21055854 to 21055868 14 - TSS region transcription start site region 50227
Tssr50228 5 21055880 to 21055961 81 - TSS region transcription start site region 50228
Gm42221 5 21055988 to 21096449 40461 + lncRNA gene predicted gene, 42221
Tssr50229 5 21055989 to 21056035 46 - TSS region transcription start site region 50229
Tssr45291 5 21056268 to 21056289 21 + TSS region transcription start site region 45291
Gm22490 5 21117083 to 21117201 118 - snoRNA gene predicted gene, 22490
Rpl31-ps21 5 21119149 to 21119522 373 - pseudogene ribosomal protein L31, pseudogene 21
Gm18830 5 21124017 to 21125412 1395 + pseudogene predicted gene, 18830
Gm42660 5 21131076 to 21132022 946 + unclassified gene predicted gene 42660
Gm42222 5 21138099 to 21144961 6862 + lncRNA gene predicted gene, 42222
Gsap 5 21176284 to 21291719 115435 + protein coding gene gamma-secretase activating protein