Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:20258596-20918900

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Magi2 5 19227036 to 20704792 1477756 + protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 2
Gm43680 5 20260623 to 20260962 339 - pseudogene predicted gene 43680
Gm22755 5 20264341 to 20264440 99 + snRNA gene predicted gene, 22755
Tssr45271 5 20416774 to 20416777 3 + TSS region transcription start site region 45271
Tssr45272 5 20497089 to 20497090 1 + TSS region transcription start site region 45272
D5Mit295 5 20568334 to 20568451 117 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 295
Gm3544 5 20588596 to 20588900 304 + pseudogene predicted gene 3544
D5Ertd543e 5 20591042 to 20591244 202 DNA segment DNA segment, Chr 5, ERATO Doi 543, expressed
D5Mit415 5 20658450 to 20658605 155 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 415
Tssr45273 5 20677680 to 20677687 7 + TSS region transcription start site region 45273
Cpgi15557 5 20701748 to 20703224 1476 CpG island CpG island 15557
Tssr45274 5 20702129 to 20702214 85 + TSS region transcription start site region 45274
Gm29254 5 20702277 to 20706052 3775 + lncRNA gene predicted gene 29254
1110060G06Rik 5 20728394 to 20728892 498 + unclassified gene RIKEN cDNA 1110060G06 gene
Phtf2 5 20758664 to 20882124 123460 - protein coding gene putative homeodomain transcription factor 2
Tssr1433 5 20779295 to 20779342 47 + TSS region transcription start site region 1433
Rpl31-ps5 5 20806090 to 20806464 374 + pseudogene ribosomal protein L31, pseudogene 5
Gm42219 5 20807480 to 20812934 5454 + lncRNA gene predicted gene, 42219
Tssr50216 5 20855274 to 20855301 27 - TSS region transcription start site region 50216
Cpgi15558 5 20881334 to 20882885 1551 CpG island CpG island 15558
Tssr50217 5 20882014 to 20882023 9 - TSS region transcription start site region 50217
Tssr50218 5 20882032 to 20882051 19 - TSS region transcription start site region 50218
Tssr50219 5 20882072 to 20882075 3 - TSS region transcription start site region 50219
Tssr45275 5 20882094 to 20882102 8 + TSS region transcription start site region 45275
Tssr45276 5 20882110 to 20882122 12 + TSS region transcription start site region 45276
Tssr45277 5 20882124 to 20882162 38 + TSS region transcription start site region 45277
Tssr45278 5 20882175 to 20882180 5 + TSS region transcription start site region 45278
Tssr45279 5 20882445 to 20882526 81 + TSS region transcription start site region 45279
Tmem60 5 20882453 to 20886870 4417 + protein coding gene transmembrane protein 60
Tssr45280 5 20886190 to 20886198 8 + TSS region transcription start site region 45280
Rsbn1l 5 20892290 to 20952147 59857 - protein coding gene round spermatid basic protein 1-like