Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:20252277-21156052

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Magi2 5 19227036 to 20704792 1477756 + protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 2
Gm43680 5 20260623 to 20260962 339 - pseudogene predicted gene 43680
Gm22755 5 20264341 to 20264440 99 + snRNA gene predicted gene, 22755
Tssr45271 5 20416774 to 20416777 3 + TSS region transcription start site region 45271
Tssr45272 5 20497089 to 20497090 1 + TSS region transcription start site region 45272
D5Mit295 5 20568334 to 20568451 117 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 295
Gm3544 5 20588596 to 20588900 304 + pseudogene predicted gene 3544
D5Ertd543e 5 20591042 to 20591244 202 DNA segment DNA segment, Chr 5, ERATO Doi 543, expressed
D5Mit415 5 20658450 to 20658605 155 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 415
Tssr45273 5 20677680 to 20677687 7 + TSS region transcription start site region 45273
Cpgi15557 5 20701748 to 20703224 1476 CpG island CpG island 15557
Tssr45274 5 20702129 to 20702214 85 + TSS region transcription start site region 45274
Gm29254 5 20702277 to 20706052 3775 + lncRNA gene predicted gene 29254
1110060G06Rik 5 20728394 to 20728892 498 + unclassified gene RIKEN cDNA 1110060G06 gene
Phtf2 5 20758664 to 20882124 123460 - protein coding gene putative homeodomain transcription factor 2
Tssr1433 5 20779295 to 20779342 47 + TSS region transcription start site region 1433
Rpl31-ps5 5 20806090 to 20806464 374 + pseudogene ribosomal protein L31, pseudogene 5
Gm42219 5 20807480 to 20812934 5454 + lncRNA gene predicted gene, 42219
Tssr50216 5 20855274 to 20855301 27 - TSS region transcription start site region 50216
Cpgi15558 5 20881334 to 20882885 1551 CpG island CpG island 15558
Tssr50217 5 20882014 to 20882023 9 - TSS region transcription start site region 50217
Tssr50218 5 20882032 to 20882051 19 - TSS region transcription start site region 50218
Tssr50219 5 20882072 to 20882075 3 - TSS region transcription start site region 50219
Tssr45275 5 20882094 to 20882102 8 + TSS region transcription start site region 45275
Tssr45276 5 20882110 to 20882122 12 + TSS region transcription start site region 45276
Tssr45277 5 20882124 to 20882162 38 + TSS region transcription start site region 45277
Tssr45278 5 20882175 to 20882180 5 + TSS region transcription start site region 45278
Tssr45279 5 20882445 to 20882526 81 + TSS region transcription start site region 45279
Tmem60 5 20882453 to 20886870 4417 + protein coding gene transmembrane protein 60
Tssr45280 5 20886190 to 20886198 8 + TSS region transcription start site region 45280
Rsbn1l 5 20892290 to 20952147 59857 - protein coding gene round spermatid basic protein 1-like
Tssr50220 5 20945430 to 20945445 15 - TSS region transcription start site region 50220
Tssr50221 5 20945482 to 20945530 48 - TSS region transcription start site region 50221
Tssr50222 5 20945534 to 20945546 12 - TSS region transcription start site region 50222
Tssr45281 5 20945597 to 20945640 43 + TSS region transcription start site region 45281
Tssr45282 5 20950771 to 20950775 4 + TSS region transcription start site region 45282
Cpgi15559 5 20950805 to 20952146 1341 CpG island CpG island 15559
Tssr45283 5 20950930 to 20950950 20 + TSS region transcription start site region 45283
Tssr45284 5 20950956 to 20950972 16 + TSS region transcription start site region 45284
Tssr45285 5 20950983 to 20950994 11 + TSS region transcription start site region 45285
A630072M18Rik 5 20950989 to 20956398 5409 + antisense lncRNA gene RIKEN cDNA A630072M18 gene
Tssr45286 5 20951034 to 20951045 11 + TSS region transcription start site region 45286
Tssr45287 5 20951171 to 20951195 24 + TSS region transcription start site region 45287
Tssr50223 5 20951769 to 20951824 55 - TSS region transcription start site region 50223
Tssr45288 5 20951960 to 20951992 32 + TSS region transcription start site region 45288
Ptpn12 5 20986645 to 21055911 69266 - protein coding gene protein tyrosine phosphatase, non-receptor type 12
Tssr50224 5 20991986 to 20991995 9 - TSS region transcription start site region 50224
Tssr50225 5 21002834 to 21002847 13 - TSS region transcription start site region 50225
Tssr50226 5 21008638 to 21008644 6 - TSS region transcription start site region 50226
Gm43216 5 21031752 to 21033084 1332 + unclassified gene predicted gene 43216
Cpgi15560 5 21054586 to 21056496 1910 CpG island CpG island 15560
Tssr45289 5 21054982 to 21054996 14 + TSS region transcription start site region 45289
Tssr45290 5 21055035 to 21055046 11 + TSS region transcription start site region 45290
Tssr50227 5 21055854 to 21055868 14 - TSS region transcription start site region 50227
Tssr50228 5 21055880 to 21055961 81 - TSS region transcription start site region 50228
Gm42221 5 21055988 to 21096449 40461 + lncRNA gene predicted gene, 42221
Tssr50229 5 21055989 to 21056035 46 - TSS region transcription start site region 50229
Tssr45291 5 21056268 to 21056289 21 + TSS region transcription start site region 45291
Gm22490 5 21117083 to 21117201 118 - snoRNA gene predicted gene, 22490
Rpl31-ps21 5 21119149 to 21119522 373 - pseudogene ribosomal protein L31, pseudogene 21
Gm18830 5 21124017 to 21125412 1395 + pseudogene predicted gene, 18830
Gm42660 5 21131076 to 21132022 946 + unclassified gene predicted gene 42660
Gm42222 5 21138099 to 21144961 6862 + lncRNA gene predicted gene, 42222