Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:20088416-22348423

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Magi2 5 19227036 to 20704792 1477756 + protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 2
Gm23570 5 20092615 to 20092718 103 + snRNA gene predicted gene, 23570
Gm25761 5 20114320 to 20114447 127 - snoRNA gene predicted gene, 25761
Tssr45269 5 20117555 to 20117557 2 + TSS region transcription start site region 45269
Tssr45270 5 20228171 to 20228222 51 + TSS region transcription start site region 45270
Gm43680 5 20260623 to 20260962 339 - pseudogene predicted gene 43680
Gm22755 5 20264341 to 20264440 99 + snRNA gene predicted gene, 22755
Tssr45271 5 20416774 to 20416777 3 + TSS region transcription start site region 45271
Tssr45272 5 20497089 to 20497090 1 + TSS region transcription start site region 45272
D5Mit295 5 20568334 to 20568451 117 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 295
Gm3544 5 20588596 to 20588900 304 + pseudogene predicted gene 3544
D5Ertd543e 5 20591042 to 20591244 202 DNA segment DNA segment, Chr 5, ERATO Doi 543, expressed
D5Mit415 5 20658450 to 20658605 155 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 415
Tssr45273 5 20677680 to 20677687 7 + TSS region transcription start site region 45273
Cpgi15557 5 20701748 to 20703224 1476 CpG island CpG island 15557
Tssr45274 5 20702129 to 20702214 85 + TSS region transcription start site region 45274
Gm29254 5 20702277 to 20706052 3775 + lncRNA gene predicted gene 29254
1110060G06Rik 5 20728394 to 20728892 498 + unclassified gene RIKEN cDNA 1110060G06 gene
Phtf2 5 20758664 to 20882124 123460 - protein coding gene putative homeodomain transcription factor 2
Tssr1433 5 20779295 to 20779342 47 + TSS region transcription start site region 1433
Rpl31-ps5 5 20806090 to 20806464 374 + pseudogene ribosomal protein L31, pseudogene 5
Gm42219 5 20807480 to 20812934 5454 + lncRNA gene predicted gene, 42219
Tssr50216 5 20855274 to 20855301 27 - TSS region transcription start site region 50216
Cpgi15558 5 20881334 to 20882885 1551 CpG island CpG island 15558
Tssr50217 5 20882014 to 20882023 9 - TSS region transcription start site region 50217
Tssr50218 5 20882032 to 20882051 19 - TSS region transcription start site region 50218
Tssr50219 5 20882072 to 20882075 3 - TSS region transcription start site region 50219
Tssr45275 5 20882094 to 20882102 8 + TSS region transcription start site region 45275
Tssr45276 5 20882110 to 20882122 12 + TSS region transcription start site region 45276
Tssr45277 5 20882124 to 20882162 38 + TSS region transcription start site region 45277
Tssr45278 5 20882175 to 20882180 5 + TSS region transcription start site region 45278
Tssr45279 5 20882445 to 20882526 81 + TSS region transcription start site region 45279
Tmem60 5 20882453 to 20886870 4417 + protein coding gene transmembrane protein 60
Tssr45280 5 20886190 to 20886198 8 + TSS region transcription start site region 45280
Rsbn1l 5 20892290 to 20952147 59857 - protein coding gene round spermatid basic protein 1-like
Tssr50220 5 20945430 to 20945445 15 - TSS region transcription start site region 50220
Tssr50221 5 20945482 to 20945530 48 - TSS region transcription start site region 50221
Tssr50222 5 20945534 to 20945546 12 - TSS region transcription start site region 50222
Tssr45281 5 20945597 to 20945640 43 + TSS region transcription start site region 45281
Tssr45282 5 20950771 to 20950775 4 + TSS region transcription start site region 45282
Cpgi15559 5 20950805 to 20952146 1341 CpG island CpG island 15559
Tssr45283 5 20950930 to 20950950 20 + TSS region transcription start site region 45283
Tssr45284 5 20950956 to 20950972 16 + TSS region transcription start site region 45284
Tssr45285 5 20950983 to 20950994 11 + TSS region transcription start site region 45285
A630072M18Rik 5 20950989 to 20956398 5409 + antisense lncRNA gene RIKEN cDNA A630072M18 gene
Tssr45286 5 20951034 to 20951045 11 + TSS region transcription start site region 45286
Tssr45287 5 20951171 to 20951195 24 + TSS region transcription start site region 45287
Tssr50223 5 20951769 to 20951824 55 - TSS region transcription start site region 50223
Tssr45288 5 20951960 to 20951992 32 + TSS region transcription start site region 45288
Ptpn12 5 20986645 to 21055911 69266 - protein coding gene protein tyrosine phosphatase, non-receptor type 12
Tssr50224 5 20991986 to 20991995 9 - TSS region transcription start site region 50224
Tssr50225 5 21002834 to 21002847 13 - TSS region transcription start site region 50225
Tssr50226 5 21008638 to 21008644 6 - TSS region transcription start site region 50226
Gm43216 5 21031752 to 21033084 1332 + unclassified gene predicted gene 43216
Cpgi15560 5 21054586 to 21056496 1910 CpG island CpG island 15560
Tssr45289 5 21054982 to 21054996 14 + TSS region transcription start site region 45289
Tssr45290 5 21055035 to 21055046 11 + TSS region transcription start site region 45290
Tssr50227 5 21055854 to 21055868 14 - TSS region transcription start site region 50227
Tssr50228 5 21055880 to 21055961 81 - TSS region transcription start site region 50228
Gm42221 5 21055988 to 21096449 40461 + lncRNA gene predicted gene, 42221
Tssr50229 5 21055989 to 21056035 46 - TSS region transcription start site region 50229
Tssr45291 5 21056268 to 21056289 21 + TSS region transcription start site region 45291
Gm22490 5 21117083 to 21117201 118 - snoRNA gene predicted gene, 22490
Rpl31-ps21 5 21119149 to 21119522 373 - pseudogene ribosomal protein L31, pseudogene 21
Gm18830 5 21124017 to 21125412 1395 + pseudogene predicted gene, 18830
Gm42660 5 21131076 to 21132022 946 + unclassified gene predicted gene 42660
Gm42222 5 21138099 to 21144961 6862 + lncRNA gene predicted gene, 42222
Gsap 5 21176284 to 21291719 115435 + protein coding gene gamma-secretase activating protein
Cpgi15561 5 21185993 to 21186655 662 CpG island CpG island 15561
Tssr45292 5 21186237 to 21186248 11 + TSS region transcription start site region 45292
Tssr1434 5 21186259 to 21186276 17 + TSS region transcription start site region 1434
Tssr45293 5 21186284 to 21186340 56 + TSS region transcription start site region 45293
Tssr45294 5 21186343 to 21186354 11 + TSS region transcription start site region 45294
Tssr45295 5 21186375 to 21186390 15 + TSS region transcription start site region 45295
Tssr50230 5 21188499 to 21188515 16 - TSS region transcription start site region 50230
Tssr45296 5 21194418 to 21194433 15 + TSS region transcription start site region 45296
Tssr45297 5 21194473 to 21194484 11 + TSS region transcription start site region 45297
Tssr45298 5 21194583 to 21194587 4 + TSS region transcription start site region 45298
Tssr45299 5 21202730 to 21202740 10 + TSS region transcription start site region 45299
Tssr45300 5 21208621 to 21208633 12 + TSS region transcription start site region 45300
Gm43215 5 21214009 to 21214260 251 + pseudogene predicted gene 43215
Tssr45301 5 21218416 to 21218423 7 + TSS region transcription start site region 45301
Tssr45302 5 21220625 to 21220675 50 + TSS region transcription start site region 45302
Tssr45303 5 21246788 to 21246799 11 + TSS region transcription start site region 45303
Tssr45304 5 21251391 to 21251406 15 + TSS region transcription start site region 45304
Tssr45305 5 21251706 to 21251723 17 + TSS region transcription start site region 45305
Tssr45306 5 21256106 to 21256115 9 + TSS region transcription start site region 45306
Tssr45307 5 21256771 to 21256786 15 + TSS region transcription start site region 45307
Tssr45308 5 21256816 to 21256828 12 + TSS region transcription start site region 45308
Tssr1435 5 21256875 to 21256894 19 + TSS region transcription start site region 1435
Tssr45309 5 21256908 to 21256920 12 + TSS region transcription start site region 45309
Tssr45310 5 21256953 to 21256980 27 + TSS region transcription start site region 45310
Tssr45311 5 21256983 to 21257005 22 + TSS region transcription start site region 45311
Tssr45312 5 21257840 to 21257848 8 + TSS region transcription start site region 45312
Tssr45313 5 21257922 to 21257932 10 + TSS region transcription start site region 45313
Tssr45314 5 21257938 to 21257949 11 + TSS region transcription start site region 45314
Tssr45315 5 21258028 to 21258062 34 + TSS region transcription start site region 45315
Tssr45316 5 21258126 to 21258174 48 + TSS region transcription start site region 45316
Tssr45317 5 21258195 to 21258269 74 + TSS region transcription start site region 45317
Tssr45318 5 21265550 to 21265564 14 + TSS region transcription start site region 45318
Tssr45319 5 21266184 to 21266198 14 + TSS region transcription start site region 45319
Tssr45320 5 21266272 to 21266318 46 + TSS region transcription start site region 45320
Tssr45321 5 21269892 to 21269898 6 + TSS region transcription start site region 45321
Tssr45322 5 21278374 to 21278378 4 + TSS region transcription start site region 45322
Gm43214 5 21279270 to 21279621 351 - pseudogene predicted gene 43214
Tssr45323 5 21279623 to 21279626 3 + TSS region transcription start site region 45323
Ccdc146 5 21292961 to 21424677 131716 - protein coding gene coiled-coil domain containing 146
Tssr45324 5 21308440 to 21308444 4 + TSS region transcription start site region 45324
Tssr50231 5 21330690 to 21330703 13 - TSS region transcription start site region 50231
D5Mit294 5 21357317 to 21357511 194 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 294
Cpgi15562 5 21372579 to 21373105 526 CpG island CpG island 15562
Fgl2 5 21372673 to 21378386 5713 + protein coding gene fibrinogen-like protein 2
Tssr45325 5 21372696 to 21372714 18 + TSS region transcription start site region 45325
Tssr45326 5 21375438 to 21375449 11 + TSS region transcription start site region 45326
Tssr45327 5 21375720 to 21375731 11 + TSS region transcription start site region 45327
Tssr45328 5 21375752 to 21375774 22 + TSS region transcription start site region 45328
Tssr45329 5 21376488 to 21376500 12 + TSS region transcription start site region 45329
Tssr45330 5 21381228 to 21381278 50 + TSS region transcription start site region 45330
Tssr50232 5 21424641 to 21424659 18 - TSS region transcription start site region 50232
Tssr50233 5 21424664 to 21424686 22 - TSS region transcription start site region 50233
Tssr50234 5 21424692 to 21424703 11 - TSS region transcription start site region 50234
Tssr45331 5 21424865 to 21424891 26 + TSS region transcription start site region 45331
Cpgi15563 5 21424878 to 21425672 794 CpG island CpG island 15563
Tssr45332 5 21424934 to 21425013 79 + TSS region transcription start site region 45332
Fam185a 5 21424958 to 21482124 57166 + protein coding gene family with sequence similarity 185, member A
Tssr45333 5 21425038 to 21425063 25 + TSS region transcription start site region 45333
D5Nam1 5 21452511 to 21452592 81 DNA segment DNA segment, Chr 5, Notre-Dame de la Paix 1
Tssr45334 5 21475197 to 21475201 4 + TSS region transcription start site region 45334
Fbxl13 5 21483847 to 21645634 161787 - protein coding gene F-box and leucine-rich repeat protein 13
Tssr45335 5 21543485 to 21543496 11 + TSS region transcription start site region 45335
Tssr45336 5 21543504 to 21543521 17 + TSS region transcription start site region 45336
Tssr45337 5 21543525 to 21543590 65 + TSS region transcription start site region 45337
Lrrc17 5 21543559 to 21575904 32345 + protein coding gene leucine rich repeat containing 17
Tssr45338 5 21543593 to 21543612 19 + TSS region transcription start site region 45338
Tssr45339 5 21543617 to 21543638 21 + TSS region transcription start site region 45339
Cpgi15564 5 21597690 to 21597912 222 CpG island CpG island 15564
Gm6543 5 21598740 to 21599547 807 + pseudogene predicted gene 6543
Gm8539 5 21613994 to 21614494 500 - pseudogene predicted gene 8539
Tssr50235 5 21645526 to 21645527 1 - TSS region transcription start site region 50235
Tssr50236 5 21645541 to 21645610 69 - TSS region transcription start site region 50236
Tssr50237 5 21645621 to 21645627 6 - TSS region transcription start site region 50237
Cpgi15565 5 21645622 to 21646382 760 CpG island CpG island 15565
Tssr45340 5 21645855 to 21645885 30 + TSS region transcription start site region 45340
Tssr45341 5 21645978 to 21646032 54 + TSS region transcription start site region 45341
Armc10 5 21645984 to 21662592 16608 + protein coding gene armadillo repeat containing 10
Tssr45342 5 21646033 to 21646057 24 + TSS region transcription start site region 45342
Napepld 5 21662901 to 21701396 38495 - protein coding gene N-acyl phosphatidylethanolamine phospholipase D
Tssr50238 5 21664888 to 21664919 31 - TSS region transcription start site region 50238
Tssr50239 5 21664963 to 21664974 11 - TSS region transcription start site region 50239
Tssr50240 5 21665061 to 21665084 23 - TSS region transcription start site region 50240
Tssr50241 5 21665264 to 21665279 15 - TSS region transcription start site region 50241
Tssr50242 5 21665287 to 21665303 16 - TSS region transcription start site region 50242
Cpgi15566 5 21675325 to 21676088 763 CpG island CpG island 15566
Gm15719 5 21689557 to 21690175 618 + pseudogene predicted gene 15719
9530071P10Rik 5 21696281 to 21697594 1313 unclassified gene RIKEN cDNA 9530071P10 gene
Cpgi15567 5 21700966 to 21702005 1039 CpG island CpG island 15567
Tssr50243 5 21701332 to 21701404 72 - TSS region transcription start site region 50243
Tssr50244 5 21701525 to 21701535 10 - TSS region transcription start site region 50244
Cpgi15568 5 21736948 to 21737726 778 CpG island CpG island 15568
Tssr45343 5 21737142 to 21737179 37 + TSS region transcription start site region 45343
Pmpcb 5 21737160 to 21757152 19992 + protein coding gene peptidase (mitochondrial processing) beta
Gm15715 5 21748231 to 21748513 282 - pseudogene predicted gene 15715
Dnajc2 5 21757273 to 21785249 27976 - protein coding gene DnaJ heat shock protein family (Hsp40) member C2
Tssr50245 5 21768465 to 21768496 31 - TSS region transcription start site region 50245
Tssr50246 5 21773817 to 21773831 14 - TSS region transcription start site region 50246
Cpgi15569 5 21784417 to 21785340 923 CpG island CpG island 15569
Tssr50247 5 21785093 to 21785098 5 - TSS region transcription start site region 50247
Tssr50248 5 21785115 to 21785232 117 - TSS region transcription start site region 50248
Tssr45344 5 21785253 to 21785301 48 + TSS region transcription start site region 45344
Psmc2 5 21785283 to 21803784 18501 + protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase 2
Cpgi15570 5 21786400 to 21787148 748 CpG island CpG island 15570
Tssr45345 5 21786739 to 21786784 45 + TSS region transcription start site region 45345
Tssr45346 5 21786791 to 21786804 13 + TSS region transcription start site region 45346
Tssr45347 5 21790606 to 21790607 1 + TSS region transcription start site region 45347
Slc26a5 5 21810655 to 21865604 54949 - protein coding gene solute carrier family 26, member 5
D5Mit61 5 21862445 to 21862543 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 61
D5Buc45 5 21862952 to 21863225 273 DNA segment DNA segment, Chr 5, Bucan 45
Cpgi15571 5 21865428 to 21865818 390 CpG island CpG island 15571
Tssr50249 5 21865606 to 21865617 11 - TSS region transcription start site region 50249
Reln 5 21884454 to 22344702 460248 - protein coding gene reelin
Gm16111 5 21889780 to 21890064 284 + pseudogene predicted gene 16111
Hmtb11 5 21895825 to 64649236 42753411 QTL hemostasis and thrombosis 11
Hmtb10 5 21895825 to 54342976 32447151 QTL hemostasis and thrombosis 10
Tssr45348 5 21901579 to 21901601 22 + TSS region transcription start site region 45348
Gm10475 5 21910931 to 21954014 43083 + antisense lncRNA gene predicted gene 10475
Dnaja1-ps 5 21951858 to 21952499 641 - pseudogene DnaJ heat shock protein family (Hsp40) member A1, pseudogene
Gm19666 5 21956094 to 21957986 1892 - unclassified non-coding RNA gene predicted gene, 19666
Actd2 5 22179522 to 22179654 132 QTL activity-distance traveled 2
D5Mit72 5 22179522 to 22179654 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 72
D5Mit227 5 22179552 to 22179647 95 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 227
Gm16113 5 22281211 to 22281582 371 - pseudogene predicted gene 16113
Gm16112 5 22292787 to 22293168 381 + pseudogene predicted gene 16112
Gm16110 5 22334442 to 22336118 1676 + antisense lncRNA gene predicted gene 16110
Cpgi15572 5 22343732 to 22345618 1886 CpG island CpG island 15572
Tssr50250 5 22344670 to 22344681 11 - TSS region transcription start site region 50250
Tssr50251 5 22344695 to 22344710 15 - TSS region transcription start site region 50251