Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:19177036-20754792

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43032 5 19198483 to 19201605 3122 - unclassified gene predicted gene 43032
4921504A21Rik 5 19202368 to 19226555 24187 - antisense lncRNA gene RIKEN cDNA 4921504A21 gene
Gm32102 5 19203672 to 19203912 240 + pseudogene predicted gene, 32102
Cpgi15556 5 19226256 to 19227800 1544 CpG island CpG island 15556
Tssr50215 5 19226671 to 19226696 25 - TSS region transcription start site region 50215
Tssr45258 5 19226742 to 19226800 58 + TSS region transcription start site region 45258
Tssr45259 5 19226902 to 19226990 88 + TSS region transcription start site region 45259
Magi2 5 19227036 to 20704792 1477756 + protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 2
Tssr45260 5 19227055 to 19227066 11 + TSS region transcription start site region 45260
Tssr45261 5 19227204 to 19227244 40 + TSS region transcription start site region 45261
Gm21009 5 19504455 to 19506123 1668 - pseudogene predicted gene, 21009
Gm25335 5 19515405 to 19515507 102 - snRNA gene predicted gene, 25335
D5Mit147 5 19530891 to 19530986 95 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 147
D5Ertd560e 5 19581085 to 19581316 231 DNA segment DNA segment, Chr 5, ERATO Doi 560, expressed
Tssr45262 5 19697038 to 19697044 6 + TSS region transcription start site region 45262
Tssr45263 5 19766730 to 19766764 34 + TSS region transcription start site region 45263
D5Mit250 5 19848423 to 19848541 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 250
Tssr45264 5 19907502 to 19907551 49 + TSS region transcription start site region 45264
Tssr45265 5 19907711 to 19907762 51 + TSS region transcription start site region 45265
Tssr45266 5 19907774 to 19907811 37 + TSS region transcription start site region 45266
Tssr45267 5 19952656 to 19952659 3 + TSS region transcription start site region 45267
Tssr1432 5 20051011 to 20051022 11 + TSS region transcription start site region 1432
Tssr45268 5 20085587 to 20085601 14 + TSS region transcription start site region 45268
Gm23570 5 20092615 to 20092718 103 + snRNA gene predicted gene, 23570
Gm25761 5 20114320 to 20114447 127 - snoRNA gene predicted gene, 25761
Tssr45269 5 20117555 to 20117557 2 + TSS region transcription start site region 45269
Tssr45270 5 20228171 to 20228222 51 + TSS region transcription start site region 45270
Gm43680 5 20260623 to 20260962 339 - pseudogene predicted gene 43680
Gm22755 5 20264341 to 20264440 99 + snRNA gene predicted gene, 22755
Tssr45271 5 20416774 to 20416777 3 + TSS region transcription start site region 45271
Tssr45272 5 20497089 to 20497090 1 + TSS region transcription start site region 45272
D5Mit295 5 20568334 to 20568451 117 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 295
Gm3544 5 20588596 to 20588900 304 + pseudogene predicted gene 3544
D5Ertd543e 5 20591042 to 20591244 202 DNA segment DNA segment, Chr 5, ERATO Doi 543, expressed
D5Mit415 5 20658450 to 20658605 155 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 415
Tssr45273 5 20677680 to 20677687 7 + TSS region transcription start site region 45273
Cpgi15557 5 20701748 to 20703224 1476 CpG island CpG island 15557
Tssr45274 5 20702129 to 20702214 85 + TSS region transcription start site region 45274
Gm29254 5 20702277 to 20706052 3775 + lncRNA gene predicted gene 29254
1110060G06Rik 5 20728394 to 20728892 498 + unclassified gene RIKEN cDNA 1110060G06 gene