Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:17819577-19909704

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cd36 5 17781690 to 17888801 107111 - protein coding gene CD36 molecule
Tssr50171 5 17820482 to 17820535 53 - TSS region transcription start site region 50171
Tssr50172 5 17820539 to 17820570 31 - TSS region transcription start site region 50172
Tssr50173 5 17820589 to 17820604 15 - TSS region transcription start site region 50173
Tssr50174 5 17821430 to 17821441 11 - TSS region transcription start site region 50174
Tssr50175 5 17821470 to 17821483 13 - TSS region transcription start site region 50175
Tssr50176 5 17828635 to 17828649 14 - TSS region transcription start site region 50176
Tssr50177 5 17828812 to 17828831 19 - TSS region transcription start site region 50177
Tssr50178 5 17828864 to 17828869 5 - TSS region transcription start site region 50178
Tssr50179 5 17828883 to 17828890 7 - TSS region transcription start site region 50179
Tssr50180 5 17828897 to 17828944 47 - TSS region transcription start site region 50180
Tssr45256 5 17828932 to 17828939 7 + TSS region transcription start site region 45256
Tssr50181 5 17828946 to 17828972 26 - TSS region transcription start site region 50181
Tssr50182 5 17828982 to 17828996 14 - TSS region transcription start site region 50182
Tssr50183 5 17829184 to 17829199 15 - TSS region transcription start site region 50183
Tssr50184 5 17829205 to 17829220 15 - TSS region transcription start site region 50184
Tssr50185 5 17829291 to 17829297 6 - TSS region transcription start site region 50185
Tssr50186 5 17829485 to 17829548 63 - TSS region transcription start site region 50186
Tssr50187 5 17830820 to 17830860 40 - TSS region transcription start site region 50187
Tssr50188 5 17833440 to 17833456 16 - TSS region transcription start site region 50188
Tssr50189 5 17835649 to 17835709 60 - TSS region transcription start site region 50189
Tssr50190 5 17835714 to 17835741 27 - TSS region transcription start site region 50190
Tssr50191 5 17835752 to 17835757 5 - TSS region transcription start site region 50191
Tssr50192 5 17835857 to 17835878 21 - TSS region transcription start site region 50192
Tssr50193 5 17835972 to 17835986 14 - TSS region transcription start site region 50193
Tssr50194 5 17836006 to 17836040 34 - TSS region transcription start site region 50194
Tssr50195 5 17836043 to 17836060 17 - TSS region transcription start site region 50195
Tssr50196 5 17836066 to 17836077 11 - TSS region transcription start site region 50196
Tssr50197 5 17842227 to 17842250 23 - TSS region transcription start site region 50197
Tssr50198 5 17847772 to 17847790 18 - TSS region transcription start site region 50198
Tssr50199 5 17847805 to 17847831 26 - TSS region transcription start site region 50199
Tssr50200 5 17847860 to 17847870 10 - TSS region transcription start site region 50200
Tssr50201 5 17848921 to 17848942 21 - TSS region transcription start site region 50201
Tssr50202 5 17849688 to 17849703 15 - TSS region transcription start site region 50202
Tssr50203 5 17849704 to 17849735 31 - TSS region transcription start site region 50203
Tssr50204 5 17849737 to 17849781 44 - TSS region transcription start site region 50204
Tssr50205 5 17849783 to 17849794 11 - TSS region transcription start site region 50205
Tssr50206 5 17854091 to 17854097 6 - TSS region transcription start site region 50206
Tssr50207 5 17854222 to 17854287 65 - TSS region transcription start site region 50207
Tssr50208 5 17888741 to 17888837 96 - TSS region transcription start site region 50208
Tssr50209 5 17888884 to 17888893 9 - TSS region transcription start site region 50209
Gm31612 5 17932190 to 17954899 22709 + lncRNA gene predicted gene, 31612
Gnat3 5 17962570 to 18019668 57098 + protein coding gene guanine nucleotide binding protein, alpha transducing 3
Tssr50210 5 18005375 to 18005383 8 - TSS region transcription start site region 50210
Tssr50211 5 18006998 to 18007018 20 - TSS region transcription start site region 50211
Tssr45257 5 18014426 to 18014439 13 + TSS region transcription start site region 45257
Tssr1431 5 18156125 to 18156126 1 + TSS region transcription start site region 1431
Gnai1 5 18265135 to 18360355 95220 - protein coding gene guanine nucleotide binding protein (G protein), alpha inhibiting 1
Gm3527 5 18350348 to 18350807 459 + pseudogene predicted gene 3527
Cpgi15555 5 18359421 to 18360969 1548 CpG island CpG island 15555
Tssr50212 5 18360384 to 18360473 89 - TSS region transcription start site region 50212
Gm31752 5 18481705 to 18490194 8489 - lincRNA gene predicted gene, 31752
Tssr50213 5 18495200 to 18495225 25 - TSS region transcription start site region 50213
Tssr50214 5 18799611 to 18799639 28 - TSS region transcription start site region 50214
Gm17889 5 18814204 to 18814801 597 + pseudogene predicted gene, 17889
Gm23822 5 18864577 to 18864704 127 + snoRNA gene predicted gene, 23822
D5Mit332 5 18915468 to 18915604 136 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 332
D5Mit332.1 5 18915583 to 18915726 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 332.1
Gm43032 5 19198483 to 19201605 3122 - unclassified gene predicted gene 43032
4921504A21Rik 5 19202368 to 19226555 24187 - antisense lncRNA gene RIKEN cDNA 4921504A21 gene
Gm32102 5 19203672 to 19203912 240 + pseudogene predicted gene, 32102
Cpgi15556 5 19226256 to 19227800 1544 CpG island CpG island 15556
Tssr50215 5 19226671 to 19226696 25 - TSS region transcription start site region 50215
Tssr45258 5 19226742 to 19226800 58 + TSS region transcription start site region 45258
Tssr45259 5 19226902 to 19226990 88 + TSS region transcription start site region 45259
Magi2 5 19227036 to 20704792 1477756 + protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 2
Tssr45260 5 19227055 to 19227066 11 + TSS region transcription start site region 45260
Tssr45261 5 19227204 to 19227244 40 + TSS region transcription start site region 45261
Gm21009 5 19504455 to 19506123 1668 - pseudogene predicted gene, 21009
Gm25335 5 19515405 to 19515507 102 - snRNA gene predicted gene, 25335
D5Mit147 5 19530891 to 19530986 95 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 147
D5Ertd560e 5 19581085 to 19581316 231 DNA segment DNA segment, Chr 5, ERATO Doi 560, expressed
Tssr45262 5 19697038 to 19697044 6 + TSS region transcription start site region 45262
Tssr45263 5 19766730 to 19766764 34 + TSS region transcription start site region 45263
D5Mit250 5 19848423 to 19848541 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 250
Tssr45264 5 19907502 to 19907551 49 + TSS region transcription start site region 45264
Tssr45265 5 19907711 to 19907762 51 + TSS region transcription start site region 45265
Tssr45266 5 19907774 to 19907811 37 + TSS region transcription start site region 45266