Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:16992902-17802909

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Mit225 5 17005788 to 17005911 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 225
Tssr45237 5 17142230 to 17142269 39 + TSS region transcription start site region 45237
Gm6673 5 17223382 to 17226908 3526 - pseudogene predicted gene 6673
Tssr1430 5 17302743 to 17302745 2 + TSS region transcription start site region 1430
Speer4f2 5 17373165 to 17377955 4790 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4f2
Gm21999 5 17380573 to 17381699 1126 + pseudogene predicted gene 21999
Tssr50132 5 17397867 to 17397877 10 - TSS region transcription start site region 50132
Tssr50133 5 17397902 to 17397909 7 - TSS region transcription start site region 50133
Speer4f1 5 17476122 to 17480936 4814 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4F1
Gm7047 5 17493223 to 17494080 857 + pseudogene predicted gene 7047
Gm31555 5 17570785 to 17571684 899 - lncRNA gene predicted gene, 31555
Tssr50134 5 17571664 to 17571685 21 - TSS region transcription start site region 50134
Tssr45238 5 17574220 to 17574240 20 + TSS region transcription start site region 45238
Cpgi15554 5 17574255 to 17575127 872 CpG island CpG island 15554
Tssr45239 5 17574268 to 17574293 25 + TSS region transcription start site region 45239
Tssr45240 5 17574423 to 17574439 16 + TSS region transcription start site region 45240
Tssr45241 5 17574454 to 17574465 11 + TSS region transcription start site region 45241
Tssr45242 5 17574470 to 17574486 16 + TSS region transcription start site region 45242
Tssr45243 5 17574517 to 17574528 11 + TSS region transcription start site region 45243
Tssr45244 5 17574540 to 17574549 9 + TSS region transcription start site region 45244
Tssr45245 5 17574571 to 17574578 7 + TSS region transcription start site region 45245
Tssr45246 5 17574585 to 17574605 20 + TSS region transcription start site region 45246
Tssr45247 5 17574608 to 17574631 23 + TSS region transcription start site region 45247
Tssr45248 5 17574638 to 17574666 28 + TSS region transcription start site region 45248
Tssr45249 5 17574667 to 17574686 19 + TSS region transcription start site region 45249
Tssr45250 5 17574695 to 17574714 19 + TSS region transcription start site region 45250
Tssr45251 5 17574726 to 17574780 54 + TSS region transcription start site region 45251
Sema3c 5 17574816 to 17730268 155452 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
Tssr45252 5 17577038 to 17577046 8 + TSS region transcription start site region 45252
Tssr45253 5 17577820 to 17577831 11 + TSS region transcription start site region 45253
Pgia41 5 17618146 to 17618282 136 QTL proteoglycan induced arthritis 41
D5Mit1 5 17618146 to 17618282 136 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1
Tssr45254 5 17694655 to 17694657 2 + TSS region transcription start site region 45254
Tssr50135 5 17776775 to 17776798 23 - TSS region transcription start site region 50135
Tssr50136 5 17780577 to 17780608 31 - TSS region transcription start site region 50136
Tssr50137 5 17780679 to 17780696 17 - TSS region transcription start site region 50137
Cd36 5 17781690 to 17888801 107111 - protein coding gene CD36 molecule
Tssr50138 5 17782652 to 17782663 11 - TSS region transcription start site region 50138
Tssr50139 5 17782763 to 17782774 11 - TSS region transcription start site region 50139
Tssr50140 5 17782930 to 17782945 15 - TSS region transcription start site region 50140
Tssr50141 5 17785749 to 17785839 90 - TSS region transcription start site region 50141
Tssr50142 5 17785844 to 17785899 55 - TSS region transcription start site region 50142
Tssr50143 5 17787709 to 17787748 39 - TSS region transcription start site region 50143
Tssr50144 5 17788277 to 17788289 12 - TSS region transcription start site region 50144
Tssr50145 5 17788295 to 17788331 36 - TSS region transcription start site region 50145
Tssr50146 5 17795430 to 17795475 45 - TSS region transcription start site region 50146
Tssr50147 5 17795575 to 17795582 7 - TSS region transcription start site region 50147
Tssr50148 5 17795601 to 17795608 7 - TSS region transcription start site region 50148
Tssr50149 5 17795618 to 17795656 38 - TSS region transcription start site region 50149
Tssr50150 5 17795671 to 17795682 11 - TSS region transcription start site region 50150
Tssr50151 5 17795683 to 17795701 18 - TSS region transcription start site region 50151
Tssr50152 5 17796987 to 17797000 13 - TSS region transcription start site region 50152
Tssr50153 5 17797014 to 17797068 54 - TSS region transcription start site region 50153
Tssr50154 5 17797071 to 17797195 124 - TSS region transcription start site region 50154