Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:16365214-17375215

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacna2d1 5 15934691 to 16374511 439820 + protein coding gene calcium channel, voltage-dependent, alpha2/delta subunit 1
D5Mit194 5 16483327 to 16483443 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 194
Gm8984 5 16508165 to 16509183 1018 - pseudogene predicted gene 8984
Tssr45221 5 16553455 to 16553485 30 + TSS region transcription start site region 45221
Tssr45222 5 16553488 to 16553502 14 + TSS region transcription start site region 45222
Hgf 5 16553495 to 16619439 65944 + protein coding gene hepatocyte growth factor
Tssr1429 5 16553505 to 16553517 12 + TSS region transcription start site region 1429
Tssr45223 5 16553540 to 16553588 48 + TSS region transcription start site region 45223
Tssr45224 5 16553595 to 16553615 20 + TSS region transcription start site region 45224
Tssr45225 5 16553749 to 16553761 12 + TSS region transcription start site region 45225
Tssr45226 5 16553779 to 16553795 16 + TSS region transcription start site region 45226
Tssr45227 5 16553799 to 16553821 22 + TSS region transcription start site region 45227
Tssr45228 5 16553831 to 16553857 26 + TSS region transcription start site region 45228
Tssr45229 5 16553859 to 16553886 27 + TSS region transcription start site region 45229
Tssr45230 5 16553900 to 16553909 9 + TSS region transcription start site region 45230
Gm31113 5 16554026 to 16569479 15453 - lncRNA gene predicted gene, 31113
Gm43489 5 16572951 to 16573943 992 + unclassified gene predicted gene 43489
Gm42975 5 16605722 to 16607212 1490 + unclassified gene predicted gene 42975
D5Mit293 5 16639444 to 16639565 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 293
Gm8991 5 16729996 to 16731070 1074 - pseudogene predicted pseudogene 8991
Gm28710 5 16791828 to 16829017 37189 + lincRNA gene predicted gene 28710
Tssr45231 5 16870134 to 16870143 9 + TSS region transcription start site region 45231
Tssr45232 5 16870167 to 16870178 11 + TSS region transcription start site region 45232
Tssr45233 5 16870214 to 16870215 1 + TSS region transcription start site region 45233
Tssr45234 5 16870224 to 16870238 14 + TSS region transcription start site region 45234
Tssr45235 5 16870243 to 16870254 11 + TSS region transcription start site region 45235
Tssr45236 5 16870255 to 16870263 8 + TSS region transcription start site region 45236
Gm42855 5 16981036 to 16981288 252 + pseudogene predicted gene 42855
D5Mit225 5 17005788 to 17005911 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 225
Tssr45237 5 17142230 to 17142269 39 + TSS region transcription start site region 45237
Gm6673 5 17223382 to 17226908 3526 - pseudogene predicted gene 6673
Tssr1430 5 17302743 to 17302745 2 + TSS region transcription start site region 1430
Speer4f2 5 17373165 to 17377955 4790 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4f2