Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:16354284-19274300

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacna2d1 5 15934691 to 16374511 439820 + protein coding gene calcium channel, voltage-dependent, alpha2/delta subunit 1
D5Mit194 5 16483327 to 16483443 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 194
Gm8984 5 16508165 to 16509183 1018 - pseudogene predicted gene 8984
Tssr45221 5 16553455 to 16553485 30 + TSS region transcription start site region 45221
Tssr45222 5 16553488 to 16553502 14 + TSS region transcription start site region 45222
Hgf 5 16553495 to 16619439 65944 + protein coding gene hepatocyte growth factor
Tssr1429 5 16553505 to 16553517 12 + TSS region transcription start site region 1429
Tssr45223 5 16553540 to 16553588 48 + TSS region transcription start site region 45223
Tssr45224 5 16553595 to 16553615 20 + TSS region transcription start site region 45224
Tssr45225 5 16553749 to 16553761 12 + TSS region transcription start site region 45225
Tssr45226 5 16553779 to 16553795 16 + TSS region transcription start site region 45226
Tssr45227 5 16553799 to 16553821 22 + TSS region transcription start site region 45227
Tssr45228 5 16553831 to 16553857 26 + TSS region transcription start site region 45228
Tssr45229 5 16553859 to 16553886 27 + TSS region transcription start site region 45229
Tssr45230 5 16553900 to 16553909 9 + TSS region transcription start site region 45230
Gm31113 5 16554026 to 16569479 15453 - lncRNA gene predicted gene, 31113
Gm43489 5 16572951 to 16573943 992 + unclassified gene predicted gene 43489
Gm42975 5 16605722 to 16607212 1490 + unclassified gene predicted gene 42975
D5Mit293 5 16639444 to 16639565 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 293
Gm8991 5 16729996 to 16731070 1074 - pseudogene predicted pseudogene 8991
Gm28710 5 16791828 to 16829017 37189 + lincRNA gene predicted gene 28710
Tssr45231 5 16870134 to 16870143 9 + TSS region transcription start site region 45231
Tssr45232 5 16870167 to 16870178 11 + TSS region transcription start site region 45232
Tssr45233 5 16870214 to 16870215 1 + TSS region transcription start site region 45233
Tssr45234 5 16870224 to 16870238 14 + TSS region transcription start site region 45234
Tssr45235 5 16870243 to 16870254 11 + TSS region transcription start site region 45235
Tssr45236 5 16870255 to 16870263 8 + TSS region transcription start site region 45236
Gm42855 5 16981036 to 16981288 252 + pseudogene predicted gene 42855
D5Mit225 5 17005788 to 17005911 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 225
Tssr45237 5 17142230 to 17142269 39 + TSS region transcription start site region 45237
Gm6673 5 17223382 to 17226908 3526 - pseudogene predicted gene 6673
Tssr1430 5 17302743 to 17302745 2 + TSS region transcription start site region 1430
Speer4f2 5 17373165 to 17377955 4790 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4f2
Gm21999 5 17380573 to 17381699 1126 + pseudogene predicted gene 21999
Tssr50132 5 17397867 to 17397877 10 - TSS region transcription start site region 50132
Tssr50133 5 17397902 to 17397909 7 - TSS region transcription start site region 50133
Speer4f1 5 17476122 to 17480936 4814 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4F1
Gm7047 5 17493223 to 17494080 857 + pseudogene predicted gene 7047
Gm31555 5 17570785 to 17571684 899 - lncRNA gene predicted gene, 31555
Tssr50134 5 17571664 to 17571685 21 - TSS region transcription start site region 50134
Tssr45238 5 17574220 to 17574240 20 + TSS region transcription start site region 45238
Cpgi15554 5 17574255 to 17575127 872 CpG island CpG island 15554
Tssr45239 5 17574268 to 17574293 25 + TSS region transcription start site region 45239
Tssr45240 5 17574423 to 17574439 16 + TSS region transcription start site region 45240
Tssr45241 5 17574454 to 17574465 11 + TSS region transcription start site region 45241
Tssr45242 5 17574470 to 17574486 16 + TSS region transcription start site region 45242
Tssr45243 5 17574517 to 17574528 11 + TSS region transcription start site region 45243
Tssr45244 5 17574540 to 17574549 9 + TSS region transcription start site region 45244
Tssr45245 5 17574571 to 17574578 7 + TSS region transcription start site region 45245
Tssr45246 5 17574585 to 17574605 20 + TSS region transcription start site region 45246
Tssr45247 5 17574608 to 17574631 23 + TSS region transcription start site region 45247
Tssr45248 5 17574638 to 17574666 28 + TSS region transcription start site region 45248
Tssr45249 5 17574667 to 17574686 19 + TSS region transcription start site region 45249
Tssr45250 5 17574695 to 17574714 19 + TSS region transcription start site region 45250
Tssr45251 5 17574726 to 17574780 54 + TSS region transcription start site region 45251
Sema3c 5 17574816 to 17730268 155452 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
Tssr45252 5 17577038 to 17577046 8 + TSS region transcription start site region 45252
Tssr45253 5 17577820 to 17577831 11 + TSS region transcription start site region 45253
Pgia41 5 17618146 to 17618282 136 QTL proteoglycan induced arthritis 41
D5Mit1 5 17618146 to 17618282 136 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1
Tssr45254 5 17694655 to 17694657 2 + TSS region transcription start site region 45254
Tssr50135 5 17776775 to 17776798 23 - TSS region transcription start site region 50135
Tssr50136 5 17780577 to 17780608 31 - TSS region transcription start site region 50136
Tssr50137 5 17780679 to 17780696 17 - TSS region transcription start site region 50137
Cd36 5 17781690 to 17888801 107111 - protein coding gene CD36 molecule
Tssr50138 5 17782652 to 17782663 11 - TSS region transcription start site region 50138
Tssr50139 5 17782763 to 17782774 11 - TSS region transcription start site region 50139
Tssr50140 5 17782930 to 17782945 15 - TSS region transcription start site region 50140
Tssr50141 5 17785749 to 17785839 90 - TSS region transcription start site region 50141
Tssr50142 5 17785844 to 17785899 55 - TSS region transcription start site region 50142
Tssr50143 5 17787709 to 17787748 39 - TSS region transcription start site region 50143
Tssr50144 5 17788277 to 17788289 12 - TSS region transcription start site region 50144
Tssr50145 5 17788295 to 17788331 36 - TSS region transcription start site region 50145
Tssr50146 5 17795430 to 17795475 45 - TSS region transcription start site region 50146
Tssr50147 5 17795575 to 17795582 7 - TSS region transcription start site region 50147
Tssr50148 5 17795601 to 17795608 7 - TSS region transcription start site region 50148
Tssr50149 5 17795618 to 17795656 38 - TSS region transcription start site region 50149
Tssr50150 5 17795671 to 17795682 11 - TSS region transcription start site region 50150
Tssr50151 5 17795683 to 17795701 18 - TSS region transcription start site region 50151
Tssr50152 5 17796987 to 17797000 13 - TSS region transcription start site region 50152
Tssr50153 5 17797014 to 17797068 54 - TSS region transcription start site region 50153
Tssr50154 5 17797071 to 17797195 124 - TSS region transcription start site region 50154
Tssr50155 5 17806055 to 17806075 20 - TSS region transcription start site region 50155
Tssr50156 5 17806170 to 17806206 36 - TSS region transcription start site region 50156
Tssr50157 5 17806251 to 17806273 22 - TSS region transcription start site region 50157
Tssr50158 5 17806380 to 17806423 43 - TSS region transcription start site region 50158
Tssr50159 5 17807886 to 17807891 5 - TSS region transcription start site region 50159
Tssr50160 5 17808380 to 17808381 1 - TSS region transcription start site region 50160
Tssr50161 5 17811205 to 17811237 32 - TSS region transcription start site region 50161
Tssr50162 5 17813044 to 17813089 45 - TSS region transcription start site region 50162
Tssr50163 5 17813094 to 17813118 24 - TSS region transcription start site region 50163
Tssr50164 5 17814144 to 17814188 44 - TSS region transcription start site region 50164
Tssr50165 5 17814191 to 17814200 9 - TSS region transcription start site region 50165
Tssr50166 5 17814215 to 17814219 4 - TSS region transcription start site region 50166
Tssr50167 5 17814221 to 17814232 11 - TSS region transcription start site region 50167
Tssr50168 5 17814253 to 17814268 15 - TSS region transcription start site region 50168
Tssr50169 5 17814284 to 17814300 16 - TSS region transcription start site region 50169
Tssr50170 5 17814699 to 17814831 132 - TSS region transcription start site region 50170
Tssr45255 5 17814758 to 17814796 38 + TSS region transcription start site region 45255
Tssr50171 5 17820482 to 17820535 53 - TSS region transcription start site region 50171
Tssr50172 5 17820539 to 17820570 31 - TSS region transcription start site region 50172
Tssr50173 5 17820589 to 17820604 15 - TSS region transcription start site region 50173
Tssr50174 5 17821430 to 17821441 11 - TSS region transcription start site region 50174
Tssr50175 5 17821470 to 17821483 13 - TSS region transcription start site region 50175
Tssr50176 5 17828635 to 17828649 14 - TSS region transcription start site region 50176
Tssr50177 5 17828812 to 17828831 19 - TSS region transcription start site region 50177
Tssr50178 5 17828864 to 17828869 5 - TSS region transcription start site region 50178
Tssr50179 5 17828883 to 17828890 7 - TSS region transcription start site region 50179
Tssr50180 5 17828897 to 17828944 47 - TSS region transcription start site region 50180
Tssr45256 5 17828932 to 17828939 7 + TSS region transcription start site region 45256
Tssr50181 5 17828946 to 17828972 26 - TSS region transcription start site region 50181
Tssr50182 5 17828982 to 17828996 14 - TSS region transcription start site region 50182
Tssr50183 5 17829184 to 17829199 15 - TSS region transcription start site region 50183
Tssr50184 5 17829205 to 17829220 15 - TSS region transcription start site region 50184
Tssr50185 5 17829291 to 17829297 6 - TSS region transcription start site region 50185
Tssr50186 5 17829485 to 17829548 63 - TSS region transcription start site region 50186
Tssr50187 5 17830820 to 17830860 40 - TSS region transcription start site region 50187
Tssr50188 5 17833440 to 17833456 16 - TSS region transcription start site region 50188
Tssr50189 5 17835649 to 17835709 60 - TSS region transcription start site region 50189
Tssr50190 5 17835714 to 17835741 27 - TSS region transcription start site region 50190
Tssr50191 5 17835752 to 17835757 5 - TSS region transcription start site region 50191
Tssr50192 5 17835857 to 17835878 21 - TSS region transcription start site region 50192
Tssr50193 5 17835972 to 17835986 14 - TSS region transcription start site region 50193
Tssr50194 5 17836006 to 17836040 34 - TSS region transcription start site region 50194
Tssr50195 5 17836043 to 17836060 17 - TSS region transcription start site region 50195
Tssr50196 5 17836066 to 17836077 11 - TSS region transcription start site region 50196
Tssr50197 5 17842227 to 17842250 23 - TSS region transcription start site region 50197
Tssr50198 5 17847772 to 17847790 18 - TSS region transcription start site region 50198
Tssr50199 5 17847805 to 17847831 26 - TSS region transcription start site region 50199
Tssr50200 5 17847860 to 17847870 10 - TSS region transcription start site region 50200
Tssr50201 5 17848921 to 17848942 21 - TSS region transcription start site region 50201
Tssr50202 5 17849688 to 17849703 15 - TSS region transcription start site region 50202
Tssr50203 5 17849704 to 17849735 31 - TSS region transcription start site region 50203
Tssr50204 5 17849737 to 17849781 44 - TSS region transcription start site region 50204
Tssr50205 5 17849783 to 17849794 11 - TSS region transcription start site region 50205
Tssr50206 5 17854091 to 17854097 6 - TSS region transcription start site region 50206
Tssr50207 5 17854222 to 17854287 65 - TSS region transcription start site region 50207
Tssr50208 5 17888741 to 17888837 96 - TSS region transcription start site region 50208
Tssr50209 5 17888884 to 17888893 9 - TSS region transcription start site region 50209
Gm31612 5 17932190 to 17954899 22709 + lncRNA gene predicted gene, 31612
Gnat3 5 17962570 to 18019668 57098 + protein coding gene guanine nucleotide binding protein, alpha transducing 3
Tssr50210 5 18005375 to 18005383 8 - TSS region transcription start site region 50210
Tssr50211 5 18006998 to 18007018 20 - TSS region transcription start site region 50211
Tssr45257 5 18014426 to 18014439 13 + TSS region transcription start site region 45257
Tssr1431 5 18156125 to 18156126 1 + TSS region transcription start site region 1431
Gnai1 5 18265135 to 18360355 95220 - protein coding gene guanine nucleotide binding protein (G protein), alpha inhibiting 1
Gm3527 5 18350348 to 18350807 459 + pseudogene predicted gene 3527
Cpgi15555 5 18359421 to 18360969 1548 CpG island CpG island 15555
Tssr50212 5 18360384 to 18360473 89 - TSS region transcription start site region 50212
Gm31752 5 18481705 to 18490194 8489 - lincRNA gene predicted gene, 31752
Tssr50213 5 18495200 to 18495225 25 - TSS region transcription start site region 50213
Tssr50214 5 18799611 to 18799639 28 - TSS region transcription start site region 50214
Gm17889 5 18814204 to 18814801 597 + pseudogene predicted gene, 17889
Gm23822 5 18864577 to 18864704 127 + snoRNA gene predicted gene, 23822
D5Mit332 5 18915468 to 18915604 136 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 332
D5Mit332.1 5 18915583 to 18915726 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 332.1
Gm43032 5 19198483 to 19201605 3122 - unclassified gene predicted gene 43032
4921504A21Rik 5 19202368 to 19226555 24187 - antisense lncRNA gene RIKEN cDNA 4921504A21 gene
Gm32102 5 19203672 to 19203912 240 + pseudogene predicted gene, 32102
Cpgi15556 5 19226256 to 19227800 1544 CpG island CpG island 15556
Tssr50215 5 19226671 to 19226696 25 - TSS region transcription start site region 50215
Tssr45258 5 19226742 to 19226800 58 + TSS region transcription start site region 45258
Tssr45259 5 19226902 to 19226990 88 + TSS region transcription start site region 45259
Magi2 5 19227036 to 20704792 1477756 + protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 2
Tssr45260 5 19227055 to 19227066 11 + TSS region transcription start site region 45260
Tssr45261 5 19227204 to 19227244 40 + TSS region transcription start site region 45261