Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:15620722-17592212

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30417 5 15609971 to 15634110 24139 - lncRNA gene predicted gene, 30417
Speer4d 5 15619099 to 15623864 4765 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4D
4930572O03Rik 5 15652288 to 15657059 4771 - protein coding gene RIKEN cDNA 4930572O03 gene
Speer4cos 5 15680710 to 15714596 33886 + antisense lncRNA gene spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript
Speer4c 5 15709501 to 15714271 4770 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4C
Gm42452 5 15798001 to 15799033 1032 + pseudogene predicted gene 42452
Gm42454 5 15805564 to 15806744 1180 + unclassified gene predicted gene 42454
4930519H02Rik 5 15863928 to 15883766 19838 - lincRNA gene RIKEN cDNA 4930519H02 gene
Gm42453 5 15870247 to 15870655 408 + pseudogene predicted gene 42453
Tssr50129 5 15883797 to 15883805 8 - TSS region transcription start site region 50129
Tssr50130 5 15883806 to 15883810 4 - TSS region transcription start site region 50130
Tssr50131 5 15883814 to 15883833 19 - TSS region transcription start site region 50131
Gm42451 5 15900244 to 15900487 243 - pseudogene predicted gene 42451
Gm3510 5 15923755 to 15933406 9651 - lincRNA gene predicted gene 3510
Cpgi15553 5 15933981 to 15935641 1660 CpG island CpG island 15553
Tssr45209 5 15934373 to 15934397 24 + TSS region transcription start site region 45209
Tssr45210 5 15934556 to 15934624 68 + TSS region transcription start site region 45210
Tssr1426 5 15934674 to 15934679 5 + TSS region transcription start site region 1426
Tssr45211 5 15934685 to 15934696 11 + TSS region transcription start site region 45211
Cacna2d1 5 15934691 to 16374511 439820 + protein coding gene calcium channel, voltage-dependent, alpha2/delta subunit 1
Tssr45212 5 15934706 to 15934719 13 + TSS region transcription start site region 45212
Tssr45213 5 15934731 to 15934746 15 + TSS region transcription start site region 45213
Tssr45214 5 15934762 to 15934787 25 + TSS region transcription start site region 45214
Tssr1427 5 15934891 to 15934900 9 + TSS region transcription start site region 1427
Tssr45215 5 15934913 to 15934926 13 + TSS region transcription start site region 45215
Tssr45216 5 15934953 to 15934962 9 + TSS region transcription start site region 45216
6720420G18Rik 5 15969941 to 15971044 1103 unclassified gene RIKEN cDNA 6720420G18 gene
Tssr45217 5 15991096 to 15991097 1 + TSS region transcription start site region 45217
9630055L06Rik 5 15993956 to 15999061 5105 lncRNA gene RIKEN cDNA 9630055L06 gene
Gm43000 5 15993957 to 15997839 3882 - antisense lncRNA gene predicted gene 43000
Tssr45218 5 16008810 to 16008811 1 + TSS region transcription start site region 45218
D5Mit226 5 16010646 to 16010769 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 226
Gm43490 5 16107129 to 16109780 2651 + unclassified gene predicted gene 43490
Tssr1428 5 16181274 to 16181281 7 + TSS region transcription start site region 1428
Tssr45219 5 16293333 to 16293337 4 + TSS region transcription start site region 45219
Tssr45220 5 16296820 to 16296824 4 + TSS region transcription start site region 45220
Gm43491 5 16343398 to 16344181 783 - pseudogene predicted gene 43491
D5Mit194 5 16483327 to 16483443 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 194
Gm8984 5 16508165 to 16509183 1018 - pseudogene predicted gene 8984
Tssr45221 5 16553455 to 16553485 30 + TSS region transcription start site region 45221
Tssr45222 5 16553488 to 16553502 14 + TSS region transcription start site region 45222
Hgf 5 16553495 to 16619439 65944 + protein coding gene hepatocyte growth factor
Tssr1429 5 16553505 to 16553517 12 + TSS region transcription start site region 1429
Tssr45223 5 16553540 to 16553588 48 + TSS region transcription start site region 45223
Tssr45224 5 16553595 to 16553615 20 + TSS region transcription start site region 45224
Tssr45225 5 16553749 to 16553761 12 + TSS region transcription start site region 45225
Tssr45226 5 16553779 to 16553795 16 + TSS region transcription start site region 45226
Tssr45227 5 16553799 to 16553821 22 + TSS region transcription start site region 45227
Tssr45228 5 16553831 to 16553857 26 + TSS region transcription start site region 45228
Tssr45229 5 16553859 to 16553886 27 + TSS region transcription start site region 45229
Tssr45230 5 16553900 to 16553909 9 + TSS region transcription start site region 45230
Gm31113 5 16554026 to 16569479 15453 - lncRNA gene predicted gene, 31113
Gm43489 5 16572951 to 16573943 992 + unclassified gene predicted gene 43489
Gm42975 5 16605722 to 16607212 1490 + unclassified gene predicted gene 42975
D5Mit293 5 16639444 to 16639565 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 293
Gm8991 5 16729996 to 16731070 1074 - pseudogene predicted pseudogene 8991
Gm28710 5 16791828 to 16829017 37189 + lincRNA gene predicted gene 28710
Tssr45231 5 16870134 to 16870143 9 + TSS region transcription start site region 45231
Tssr45232 5 16870167 to 16870178 11 + TSS region transcription start site region 45232
Tssr45233 5 16870214 to 16870215 1 + TSS region transcription start site region 45233
Tssr45234 5 16870224 to 16870238 14 + TSS region transcription start site region 45234
Tssr45235 5 16870243 to 16870254 11 + TSS region transcription start site region 45235
Tssr45236 5 16870255 to 16870263 8 + TSS region transcription start site region 45236
Gm42855 5 16981036 to 16981288 252 + pseudogene predicted gene 42855
D5Mit225 5 17005788 to 17005911 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 225
Tssr45237 5 17142230 to 17142269 39 + TSS region transcription start site region 45237
Gm6673 5 17223382 to 17226908 3526 - pseudogene predicted gene 6673
Tssr1430 5 17302743 to 17302745 2 + TSS region transcription start site region 1430
Speer4f2 5 17373165 to 17377955 4790 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4f2
Gm21999 5 17380573 to 17381699 1126 + pseudogene predicted gene 21999
Tssr50132 5 17397867 to 17397877 10 - TSS region transcription start site region 50132
Tssr50133 5 17397902 to 17397909 7 - TSS region transcription start site region 50133
Speer4f1 5 17476122 to 17480936 4814 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4F1
Gm7047 5 17493223 to 17494080 857 + pseudogene predicted gene 7047
Gm31555 5 17570785 to 17571684 899 - lncRNA gene predicted gene, 31555
Tssr50134 5 17571664 to 17571685 21 - TSS region transcription start site region 50134
Tssr45238 5 17574220 to 17574240 20 + TSS region transcription start site region 45238
Cpgi15554 5 17574255 to 17575127 872 CpG island CpG island 15554
Tssr45239 5 17574268 to 17574293 25 + TSS region transcription start site region 45239
Tssr45240 5 17574423 to 17574439 16 + TSS region transcription start site region 45240
Tssr45241 5 17574454 to 17574465 11 + TSS region transcription start site region 45241
Tssr45242 5 17574470 to 17574486 16 + TSS region transcription start site region 45242
Tssr45243 5 17574517 to 17574528 11 + TSS region transcription start site region 45243
Tssr45244 5 17574540 to 17574549 9 + TSS region transcription start site region 45244
Tssr45245 5 17574571 to 17574578 7 + TSS region transcription start site region 45245
Tssr45246 5 17574585 to 17574605 20 + TSS region transcription start site region 45246
Tssr45247 5 17574608 to 17574631 23 + TSS region transcription start site region 45247
Tssr45248 5 17574638 to 17574666 28 + TSS region transcription start site region 45248
Tssr45249 5 17574667 to 17574686 19 + TSS region transcription start site region 45249
Tssr45250 5 17574695 to 17574714 19 + TSS region transcription start site region 45250
Tssr45251 5 17574726 to 17574780 54 + TSS region transcription start site region 45251
Sema3c 5 17574816 to 17730268 155452 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
Tssr45252 5 17577038 to 17577046 8 + TSS region transcription start site region 45252
Tssr45253 5 17577820 to 17577831 11 + TSS region transcription start site region 45253