Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:15604556-16264624

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30613 5 15577483 to 15605125 27642 - antisense lncRNA gene predicted gene, 30613
Gm30417 5 15609971 to 15634110 24139 - lncRNA gene predicted gene, 30417
Tssr45208 5 15619087 to 15619110 23 + TSS region transcription start site region 45208
Speer4d 5 15619099 to 15623864 4765 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4D
4930572O03Rik 5 15652288 to 15657059 4771 - protein coding gene RIKEN cDNA 4930572O03 gene
Speer4cos 5 15680710 to 15714596 33886 + antisense lncRNA gene spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript
Speer4c 5 15709501 to 15714271 4770 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4C
Gm42452 5 15798001 to 15799033 1032 + pseudogene predicted gene 42452
Gm42454 5 15805564 to 15806744 1180 + unclassified gene predicted gene 42454
4930519H02Rik 5 15863928 to 15883766 19838 - lincRNA gene RIKEN cDNA 4930519H02 gene
Gm42453 5 15870247 to 15870655 408 + pseudogene predicted gene 42453
Tssr50129 5 15883797 to 15883805 8 - TSS region transcription start site region 50129
Tssr50130 5 15883806 to 15883810 4 - TSS region transcription start site region 50130
Tssr50131 5 15883814 to 15883833 19 - TSS region transcription start site region 50131
Gm42451 5 15900244 to 15900487 243 - pseudogene predicted gene 42451
Gm3510 5 15923755 to 15933406 9651 - lincRNA gene predicted gene 3510
Cpgi15553 5 15933981 to 15935641 1660 CpG island CpG island 15553
Tssr45209 5 15934373 to 15934397 24 + TSS region transcription start site region 45209
Tssr45210 5 15934556 to 15934624 68 + TSS region transcription start site region 45210
Tssr1426 5 15934674 to 15934679 5 + TSS region transcription start site region 1426
Tssr45211 5 15934685 to 15934696 11 + TSS region transcription start site region 45211
Cacna2d1 5 15934691 to 16374511 439820 + protein coding gene calcium channel, voltage-dependent, alpha2/delta subunit 1
Tssr45212 5 15934706 to 15934719 13 + TSS region transcription start site region 45212
Tssr45213 5 15934731 to 15934746 15 + TSS region transcription start site region 45213
Tssr45214 5 15934762 to 15934787 25 + TSS region transcription start site region 45214
Tssr1427 5 15934891 to 15934900 9 + TSS region transcription start site region 1427
Tssr45215 5 15934913 to 15934926 13 + TSS region transcription start site region 45215
Tssr45216 5 15934953 to 15934962 9 + TSS region transcription start site region 45216
6720420G18Rik 5 15969941 to 15971044 1103 unclassified gene RIKEN cDNA 6720420G18 gene
Tssr45217 5 15991096 to 15991097 1 + TSS region transcription start site region 45217
9630055L06Rik 5 15993956 to 15999061 5105 lncRNA gene RIKEN cDNA 9630055L06 gene
Gm43000 5 15993957 to 15997839 3882 - antisense lncRNA gene predicted gene 43000
Tssr45218 5 16008810 to 16008811 1 + TSS region transcription start site region 45218
D5Mit226 5 16010646 to 16010769 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 226
Gm43490 5 16107129 to 16109780 2651 + unclassified gene predicted gene 43490
Tssr1428 5 16181274 to 16181281 7 + TSS region transcription start site region 1428