Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:151100916-152181214

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stard13 5 151037510 to 151233836 196326 - protein coding gene StAR-related lipid transfer (START) domain containing 13
Gm42906 5 151063546 to 151428163 364617 - protein coding gene predicted gene 42906
Tssr54671 5 151127476 to 151127491 15 - TSS region transcription start site region 54671
Tssr54672 5 151127535 to 151127544 9 - TSS region transcription start site region 54672
Tssr54673 5 151127553 to 151127567 14 - TSS region transcription start site region 54673
Tssr54674 5 151127573 to 151127597 24 - TSS region transcription start site region 54674
Tssr54675 5 151137961 to 151137966 5 - TSS region transcription start site region 54675
Tssr54676 5 151176445 to 151176449 4 - TSS region transcription start site region 54676
Cpgi17115 5 151189724 to 151189995 271 CpG island CpG island 17115
Tssr54677 5 151190142 to 151190153 11 - TSS region transcription start site region 54677
Tssr54678 5 151190154 to 151190219 65 - TSS region transcription start site region 54678
D5Ertd505e 5 151227096 to 151227299 203 DNA segment DNA segment, Chr 5, ERATO Doi 505, expressed
Cpgi17116 5 151233302 to 151234020 718 CpG island CpG island 17116
Tssr54679 5 151233768 to 151233791 23 - TSS region transcription start site region 54679
Tssr54680 5 151233818 to 151233851 33 - TSS region transcription start site region 54680
Tssr54681 5 151234020 to 151234034 14 - TSS region transcription start site region 54681
Tssr54682 5 151234047 to 151234066 19 - TSS region transcription start site region 54682
5430435K18Rik 5 151252305 to 151259264 6959 + lincRNA gene RIKEN cDNA 5430435K18 gene
Tssr49973 5 151252422 to 151252432 10 + TSS region transcription start site region 49973
Tssr49974 5 151252504 to 151252511 7 + TSS region transcription start site region 49974
Tssr49975 5 151252519 to 151252533 14 + TSS region transcription start site region 49975
Gm7041 5 151281123 to 151281645 522 + pseudogene predicted gene 7041
D5Mit102 5 151347531 to 151347669 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 102
D730045B01Rik 5 151367720 to 151428210 60490 - lincRNA gene RIKEN cDNA D730045B01 gene
Cpgi17117 5 151368034 to 151369563 1529 CpG island CpG island 17117
Tssr54683 5 151368440 to 151368474 34 - TSS region transcription start site region 54683
Tssr54684 5 151368476 to 151368489 13 - TSS region transcription start site region 54684
Tssr54685 5 151368493 to 151368505 12 - TSS region transcription start site region 54685
1700028E10Rik 5 151368675 to 151414083 45408 + lncRNA gene RIKEN cDNA 1700028E10 gene
Tssr49976 5 151368683 to 151368723 40 + TSS region transcription start site region 49976
Tssr49977 5 151368992 to 151369013 21 + TSS region transcription start site region 49977
Tssr49978 5 151371374 to 151371378 4 + TSS region transcription start site region 49978
Tssr49979 5 151400105 to 151400146 41 + TSS region transcription start site region 49979
Tssr49980 5 151400239 to 151400250 11 + TSS region transcription start site region 49980
Tssr49981 5 151401113 to 151401134 21 + TSS region transcription start site region 49981
Tssr49982 5 151406500 to 151406511 11 + TSS region transcription start site region 49982
Gm3704 5 151406504 to 151432118 25614 + lncRNA gene predicted gene 3704
Tssr1763 5 151406542 to 151406551 9 + TSS region transcription start site region 1763
Gm36579 5 151416419 to 151423451 7032 + lncRNA gene predicted gene, 36579
Tssr54686 5 151428150 to 151428162 12 - TSS region transcription start site region 54686
Tssr54687 5 151428172 to 151428187 15 - TSS region transcription start site region 54687
Vmn2r-ps25 5 151435966 to 151461865 25899 - pseudogene vomeronasal 2, receptor, pseudogene 25
Tssr1764 5 151488483 to 151488484 1 + TSS region transcription start site region 1764
Vmn2r-ps26 5 151513135 to 151549267 36132 - pseudogene vomeronasal 2, receptor, pseudogene 26
Vmn2r18 5 151561661 to 151586924 25263 - protein coding gene vomeronasal 2, receptor 18
Vmn2r-ps27 5 151635991 to 151638218 2227 + pseudogene vomeronasal 2, receptor, pseudogene 27
Vmn2r-ps28 5 151640916 to 151641214 298 + pseudogene vomeronasal 2, receptor, pseudogene 28
Rfc3 5 151642824 to 151651208 8384 - protein coding gene replication factor C (activator 1) 3
Tssr54688 5 151645570 to 151645585 15 - TSS region transcription start site region 54688
Cpgi17118 5 151650751 to 151651370 619 CpG island CpG island 17118
Tssr54689 5 151651156 to 151651213 57 - TSS region transcription start site region 54689
Tssr54690 5 151651216 to 151651237 21 - TSS region transcription start site region 54690
Gm43038 5 151668049 to 151668136 87 - pseudogene predicted gene 43038
Gm43129 5 151685811 to 151693926 8115 + lincRNA gene predicted gene 43129
Gm24242 5 151700202 to 151700308 106 - snRNA gene predicted gene, 24242
Gm26463 5 151702368 to 151702468 100 - miRNA gene predicted gene, 26463