Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:150568546-151923163

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brca2 5 150522630 to 150570329 47699 + protein coding gene breast cancer 2, early onset
Gm43690 5 150570833 to 150571098 265 - lincRNA gene predicted gene 43690
N4bp2l1 5 150571643 to 150594525 22882 - protein coding gene NEDD4 binding protein 2-like 1
Tssr54664 5 150583794 to 150583800 6 - TSS region transcription start site region 54664
Cpgi17108 5 150593160 to 150594889 1729 CpG island CpG island 17108
Tssr54665 5 150594471 to 150594488 17 - TSS region transcription start site region 54665
Tssr54666 5 150594493 to 150594535 42 - TSS region transcription start site region 54666
Gm43598 5 150597062 to 150599540 2478 - lincRNA gene predicted gene 43598
Cpgi17109 5 150598376 to 150598586 210 CpG island CpG island 17109
Gm43597 5 150599932 to 150607003 7071 - lincRNA gene predicted gene 43597
N4bp2l2 5 150608007 to 150666183 58176 - protein coding gene NEDD4 binding protein 2-like 2
Cpgi17110 5 150665009 to 150665791 782 CpG island CpG island 17110
Tssr54667 5 150665212 to 150665226 14 - TSS region transcription start site region 54667
Tssr49954 5 150665297 to 150665308 11 + TSS region transcription start site region 49954
Tssr54668 5 150665315 to 150665377 62 - TSS region transcription start site region 54668
Tssr54669 5 150665417 to 150665444 27 - TSS region transcription start site region 54669
Tssr54670 5 150665560 to 150665606 46 - TSS region transcription start site region 54670
Gm40353 5 150671178 to 150703016 31838 + protein coding gene predicted gene, 40353
Cpgi17111 5 150673306 to 150674786 1480 CpG island CpG island 17111
Pds5b 5 150673744 to 150810669 136925 + protein coding gene PDS5 cohesin associated factor B
Tssr49955 5 150673752 to 150673817 65 + TSS region transcription start site region 49955
Tssr49956 5 150673846 to 150673877 31 + TSS region transcription start site region 49956
Tssr49957 5 150673884 to 150673937 53 + TSS region transcription start site region 49957
D230040J21Rik 5 150678388 to 150681100 2712 unclassified gene RIKEN cDNA D230040J21 gene
Tssr49958 5 150684307 to 150684310 3 + TSS region transcription start site region 49958
Gm24630 5 150708044 to 150708149 105 + snRNA gene predicted gene, 24630
Gm26013 5 150710846 to 150710964 118 - snoRNA gene predicted gene, 26013
Gm43807 5 150752093 to 150753873 1780 + sense intronic lncRNA gene predicted gene 43807
Tssr49959 5 150756295 to 150756320 25 + TSS region transcription start site region 49959
Tssr49960 5 150756834 to 150756846 12 + TSS region transcription start site region 49960
Tssr49961 5 150764819 to 150764826 7 + TSS region transcription start site region 49961
Tssr49962 5 150764852 to 150764859 7 + TSS region transcription start site region 49962
D5Mit192 5 150800353 to 150800491 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 192
Tssr49963 5 150800698 to 150800719 21 + TSS region transcription start site region 49963
Tssr49964 5 150800845 to 150800859 14 + TSS region transcription start site region 49964
Gm36447 5 150822859 to 150866601 43742 + lincRNA gene predicted gene, 36447
D5Ertd440e 5 150852066 to 150852288 222 DNA segment DNA segment, Chr 5, ERATO Doi 440, expressed
Gm43298 5 150863963 to 150882642 18679 - lincRNA gene predicted gene 43298
Cpgi17112 5 150918657 to 150918879 222 CpG island CpG island 17112
Tssr49965 5 150925043 to 150925049 6 + TSS region transcription start site region 49965
Cpgi17113 5 150952183 to 150953557 1374 CpG island CpG island 17113
Kl 5 150952607 to 150993817 41210 + protein coding gene klotho
Tssr49966 5 150952697 to 150952714 17 + TSS region transcription start site region 49966
Tssr49967 5 150952942 to 150952949 7 + TSS region transcription start site region 49967
Tssr49968 5 150953334 to 150953343 9 + TSS region transcription start site region 49968
Tssr49969 5 150973554 to 150973564 10 + TSS region transcription start site region 49969
Tssr49970 5 150973592 to 150973604 12 + TSS region transcription start site region 49970
Tssr1762 5 150985623 to 150985641 18 + TSS region transcription start site region 1762
Tssr49971 5 150987461 to 150987469 8 + TSS region transcription start site region 49971
Cpgi17114 5 150988651 to 150988902 251 CpG island CpG island 17114
Tssr49972 5 150992213 to 150992218 5 + TSS region transcription start site region 49972
Lmr26 5 151002093 to 151002206 113 QTL leishmaniasis resistance 26
D5Mit143 5 151002093 to 151002206 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 143
Gm8675 5 151007446 to 151009301 1855 - pseudogene predicted gene 8675
Stard13 5 151037510 to 151233836 196326 - protein coding gene StAR-related lipid transfer (START) domain containing 13
Gm42906 5 151063546 to 151428163 364617 - protein coding gene predicted gene 42906
Tssr54671 5 151127476 to 151127491 15 - TSS region transcription start site region 54671
Tssr54672 5 151127535 to 151127544 9 - TSS region transcription start site region 54672
Tssr54673 5 151127553 to 151127567 14 - TSS region transcription start site region 54673
Tssr54674 5 151127573 to 151127597 24 - TSS region transcription start site region 54674
Tssr54675 5 151137961 to 151137966 5 - TSS region transcription start site region 54675
Tssr54676 5 151176445 to 151176449 4 - TSS region transcription start site region 54676
Cpgi17115 5 151189724 to 151189995 271 CpG island CpG island 17115
Tssr54677 5 151190142 to 151190153 11 - TSS region transcription start site region 54677
Tssr54678 5 151190154 to 151190219 65 - TSS region transcription start site region 54678
D5Ertd505e 5 151227096 to 151227299 203 DNA segment DNA segment, Chr 5, ERATO Doi 505, expressed
Cpgi17116 5 151233302 to 151234020 718 CpG island CpG island 17116
Tssr54679 5 151233768 to 151233791 23 - TSS region transcription start site region 54679
Tssr54680 5 151233818 to 151233851 33 - TSS region transcription start site region 54680
Tssr54681 5 151234020 to 151234034 14 - TSS region transcription start site region 54681
Tssr54682 5 151234047 to 151234066 19 - TSS region transcription start site region 54682
5430435K18Rik 5 151252305 to 151259264 6959 + lincRNA gene RIKEN cDNA 5430435K18 gene
Tssr49973 5 151252422 to 151252432 10 + TSS region transcription start site region 49973
Tssr49974 5 151252504 to 151252511 7 + TSS region transcription start site region 49974
Tssr49975 5 151252519 to 151252533 14 + TSS region transcription start site region 49975
Gm7041 5 151281123 to 151281645 522 + pseudogene predicted gene 7041
D5Mit102 5 151347531 to 151347669 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 102
D730045B01Rik 5 151367720 to 151428210 60490 - lincRNA gene RIKEN cDNA D730045B01 gene
Cpgi17117 5 151368034 to 151369563 1529 CpG island CpG island 17117
Tssr54683 5 151368440 to 151368474 34 - TSS region transcription start site region 54683
Tssr54684 5 151368476 to 151368489 13 - TSS region transcription start site region 54684
Tssr54685 5 151368493 to 151368505 12 - TSS region transcription start site region 54685
1700028E10Rik 5 151368675 to 151414083 45408 + lncRNA gene RIKEN cDNA 1700028E10 gene
Tssr49976 5 151368683 to 151368723 40 + TSS region transcription start site region 49976
Tssr49977 5 151368992 to 151369013 21 + TSS region transcription start site region 49977
Tssr49978 5 151371374 to 151371378 4 + TSS region transcription start site region 49978
Tssr49979 5 151400105 to 151400146 41 + TSS region transcription start site region 49979
Tssr49980 5 151400239 to 151400250 11 + TSS region transcription start site region 49980
Tssr49981 5 151401113 to 151401134 21 + TSS region transcription start site region 49981
Tssr49982 5 151406500 to 151406511 11 + TSS region transcription start site region 49982
Gm3704 5 151406504 to 151432118 25614 + lncRNA gene predicted gene 3704
Tssr1763 5 151406542 to 151406551 9 + TSS region transcription start site region 1763
Gm36579 5 151416419 to 151423451 7032 + lncRNA gene predicted gene, 36579
Tssr54686 5 151428150 to 151428162 12 - TSS region transcription start site region 54686
Tssr54687 5 151428172 to 151428187 15 - TSS region transcription start site region 54687
Vmn2r-ps25 5 151435966 to 151461865 25899 - pseudogene vomeronasal 2, receptor, pseudogene 25
Tssr1764 5 151488483 to 151488484 1 + TSS region transcription start site region 1764
Vmn2r-ps26 5 151513135 to 151549267 36132 - pseudogene vomeronasal 2, receptor, pseudogene 26
Vmn2r18 5 151561661 to 151586924 25263 - protein coding gene vomeronasal 2, receptor 18
Vmn2r-ps27 5 151635991 to 151638218 2227 + pseudogene vomeronasal 2, receptor, pseudogene 27
Vmn2r-ps28 5 151640916 to 151641214 298 + pseudogene vomeronasal 2, receptor, pseudogene 28
Rfc3 5 151642824 to 151651208 8384 - protein coding gene replication factor C (activator 1) 3
Tssr54688 5 151645570 to 151645585 15 - TSS region transcription start site region 54688
Cpgi17118 5 151650751 to 151651370 619 CpG island CpG island 17118
Tssr54689 5 151651156 to 151651213 57 - TSS region transcription start site region 54689
Tssr54690 5 151651216 to 151651237 21 - TSS region transcription start site region 54690
Gm43038 5 151668049 to 151668136 87 - pseudogene predicted gene 43038
Gm43129 5 151685811 to 151693926 8115 + lincRNA gene predicted gene 43129
Gm24242 5 151700202 to 151700308 106 - snRNA gene predicted gene, 24242
Gm26463 5 151702368 to 151702468 100 - miRNA gene predicted gene, 26463