Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:150236643-150929525

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fry 5 150118645 to 150497753 379108 + protein coding gene FRY microtubule binding protein
Gm36378 5 150243863 to 150244250 387 + pseudogene predicted gene, 36378
Tssr49936 5 150259616 to 150259631 15 + TSS region transcription start site region 49936
Tssr49937 5 150259736 to 150259748 12 + TSS region transcription start site region 49937
Tssr49938 5 150259813 to 150259829 16 + TSS region transcription start site region 49938
Tssr49939 5 150259852 to 150259892 40 + TSS region transcription start site region 49939
Tssr49940 5 150259898 to 150259911 13 + TSS region transcription start site region 49940
Tssr49941 5 150259922 to 150259936 14 + TSS region transcription start site region 49941
Tssr49942 5 150259959 to 150260010 51 + TSS region transcription start site region 49942
Tssr49943 5 150260130 to 150260141 11 + TSS region transcription start site region 49943
Tssr49944 5 150260156 to 150260261 105 + TSS region transcription start site region 49944
Gm42556 5 150283995 to 150299441 15446 - antisense lncRNA gene predicted gene 42556
Tssr49945 5 150295382 to 150295433 51 + TSS region transcription start site region 49945
Gm36299 5 150408301 to 150410358 2057 + lncRNA gene predicted gene, 36299
Tssr1761 5 150409131 to 150409181 50 + TSS region transcription start site region 1761
Tssr49946 5 150418419 to 150418434 15 + TSS region transcription start site region 49946
Cpgi17106 5 150436682 to 150437268 586 CpG island CpG island 17106
Tssr49947 5 150445719 to 150445730 11 + TSS region transcription start site region 49947
Gm18753 5 150446782 to 150447347 565 + pseudogene predicted gene, 18753
Tssr49948 5 150457730 to 150457752 22 + TSS region transcription start site region 49948
Tssr49949 5 150496477 to 150496480 3 + TSS region transcription start site region 49949
Tssr49950 5 150496983 to 150496989 6 + TSS region transcription start site region 49950
Gm5 5 150499747 to 150502219 2472 - lincRNA gene predicted gene 5
Zar1l 5 150507055 to 150518164 11109 - protein coding gene zygote arrest 1-like
Gm15933 5 150509694 to 150511338 1644 - pseudogene predicted gene 15933
Cpgi17107 5 150522400 to 150523043 643 CpG island CpG island 17107
Tssr54662 5 150522540 to 150522566 26 - TSS region transcription start site region 54662
Tssr49951 5 150522599 to 150522637 38 + TSS region transcription start site region 49951
Brca2 5 150522630 to 150570329 47699 + protein coding gene breast cancer 2, early onset
Tssr49952 5 150522646 to 150522670 24 + TSS region transcription start site region 49952
Gm25284 5 150547313 to 150547453 140 - snRNA gene predicted gene, 25284
D5Bay1 5 150548229 to 150548459 230 DNA segment DNA segment, Chr 5, Baylor 1
Gm23641 5 150551707 to 150551807 100 - snRNA gene predicted gene, 23641
Gm42529 5 150558429 to 150561015 2586 - antisense lncRNA gene predicted gene 42529
Gm42531 5 150562311 to 150566358 4047 + sense intronic lncRNA gene predicted gene 42531
Tssr54663 5 150566420 to 150566425 5 - TSS region transcription start site region 54663
Tssr49953 5 150566509 to 150566542 33 + TSS region transcription start site region 49953
Gm43690 5 150570833 to 150571098 265 - lincRNA gene predicted gene 43690
N4bp2l1 5 150571643 to 150594525 22882 - protein coding gene NEDD4 binding protein 2-like 1
Tssr54664 5 150583794 to 150583800 6 - TSS region transcription start site region 54664
Cpgi17108 5 150593160 to 150594889 1729 CpG island CpG island 17108
Tssr54665 5 150594471 to 150594488 17 - TSS region transcription start site region 54665
Tssr54666 5 150594493 to 150594535 42 - TSS region transcription start site region 54666
Gm43598 5 150597062 to 150599540 2478 - lincRNA gene predicted gene 43598
Cpgi17109 5 150598376 to 150598586 210 CpG island CpG island 17109
Gm43597 5 150599932 to 150607003 7071 - lincRNA gene predicted gene 43597
N4bp2l2 5 150608007 to 150666183 58176 - protein coding gene NEDD4 binding protein 2-like 2
Cpgi17110 5 150665009 to 150665791 782 CpG island CpG island 17110
Tssr54667 5 150665212 to 150665226 14 - TSS region transcription start site region 54667
Tssr49954 5 150665297 to 150665308 11 + TSS region transcription start site region 49954
Tssr54668 5 150665315 to 150665377 62 - TSS region transcription start site region 54668
Tssr54669 5 150665417 to 150665444 27 - TSS region transcription start site region 54669
Tssr54670 5 150665560 to 150665606 46 - TSS region transcription start site region 54670
Gm40353 5 150671178 to 150703016 31838 + protein coding gene predicted gene, 40353
Cpgi17111 5 150673306 to 150674786 1480 CpG island CpG island 17111
Pds5b 5 150673744 to 150810669 136925 + protein coding gene PDS5 cohesin associated factor B
Tssr49955 5 150673752 to 150673817 65 + TSS region transcription start site region 49955
Tssr49956 5 150673846 to 150673877 31 + TSS region transcription start site region 49956
Tssr49957 5 150673884 to 150673937 53 + TSS region transcription start site region 49957
D230040J21Rik 5 150678388 to 150681100 2712 unclassified gene RIKEN cDNA D230040J21 gene
Tssr49958 5 150684307 to 150684310 3 + TSS region transcription start site region 49958
Gm24630 5 150708044 to 150708149 105 + snRNA gene predicted gene, 24630
Gm26013 5 150710846 to 150710964 118 - snoRNA gene predicted gene, 26013
Gm43807 5 150752093 to 150753873 1780 + sense intronic lncRNA gene predicted gene 43807
Tssr49959 5 150756295 to 150756320 25 + TSS region transcription start site region 49959
Tssr49960 5 150756834 to 150756846 12 + TSS region transcription start site region 49960
Tssr49961 5 150764819 to 150764826 7 + TSS region transcription start site region 49961
Tssr49962 5 150764852 to 150764859 7 + TSS region transcription start site region 49962
D5Mit192 5 150800353 to 150800491 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 192
Tssr49963 5 150800698 to 150800719 21 + TSS region transcription start site region 49963
Tssr49964 5 150800845 to 150800859 14 + TSS region transcription start site region 49964
Gm36447 5 150822859 to 150866601 43742 + lincRNA gene predicted gene, 36447
D5Ertd440e 5 150852066 to 150852288 222 DNA segment DNA segment, Chr 5, ERATO Doi 440, expressed
Gm43298 5 150863963 to 150882642 18679 - lincRNA gene predicted gene 43298
Cpgi17112 5 150918657 to 150918879 222 CpG island CpG island 17112
Tssr49965 5 150925043 to 150925049 6 + TSS region transcription start site region 49965