Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:149629297-150191252

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hsph1 5 149616843 to 149637155 20312 - protein coding gene heat shock 105kDa/110kDa protein 1
Cpgi17098 5 149635526 to 149636982 1456 CpG island CpG island 17098
Tssr54646 5 149636164 to 149636190 26 - TSS region transcription start site region 54646
Tssr54647 5 149636198 to 149636213 15 - TSS region transcription start site region 54647
Tssr54648 5 149636233 to 149636253 20 - TSS region transcription start site region 54648
Tssr54649 5 149636272 to 149636291 19 - TSS region transcription start site region 54649
Tssr54650 5 149636331 to 149636339 8 - TSS region transcription start site region 54650
Tssr49917 5 149636410 to 149636455 45 + TSS region transcription start site region 49917
Tssr49918 5 149636500 to 149636524 24 + TSS region transcription start site region 49918
Tssr49919 5 149636527 to 149636539 12 + TSS region transcription start site region 49919
Tssr54651 5 149636663 to 149636695 32 - TSS region transcription start site region 54651
Tssr49920 5 149636817 to 149636841 24 + TSS region transcription start site region 49920
Gm45954 5 149639472 to 149640346 874 + lncRNA gene predicted gene, 45954
Tssr49921 5 149641577 to 149641615 38 + TSS region transcription start site region 49921
Gm20005 5 149641610 to 149647790 6180 + lincRNA gene predicted gene, 20005
Gm5566 5 149660765 to 149661223 458 - pseudogene predicted pseudogene 5566
Cpgi17099 5 149678003 to 149679448 1445 CpG island CpG island 17099
Tssr49922 5 149678208 to 149678221 13 + TSS region transcription start site region 49922
Tssr49923 5 149678224 to 149678241 17 + TSS region transcription start site region 49923
B3glct 5 149678230 to 149762599 84369 + protein coding gene beta-3-glucosyltransferase
Tssr49924 5 149678246 to 149678304 58 + TSS region transcription start site region 49924
Tssr54652 5 149680178 to 149680180 2 - TSS region transcription start site region 54652
Gm36141 5 149742280 to 149769514 27234 - lncRNA gene predicted gene, 36141
Cpgi17100 5 149749200 to 149749440 240 CpG island CpG island 17100
Gm38587 5 149763182 to 149766083 2901 + lncRNA gene predicted gene, 38587
Tssr54653 5 149769485 to 149769523 38 - TSS region transcription start site region 54653
Gm21221 5 149801990 to 149811751 9761 - lincRNA gene predicted gene, 21221
Tssr54654 5 149802548 to 149802574 26 - TSS region transcription start site region 54654
Tssr54655 5 149814633 to 149814636 3 - TSS region transcription start site region 54655
Tssr54656 5 149819992 to 149819996 4 - TSS region transcription start site region 54656
Tssr54657 5 149825337 to 149825347 10 - TSS region transcription start site region 54657
Tssr54658 5 149827662 to 149827666 4 - TSS region transcription start site region 54658
Cpgi17101 5 149831412 to 149831786 374 CpG island CpG island 17101
Tssr54659 5 149831583 to 149831594 11 - TSS region transcription start site region 54659
Tssr49925 5 149831723 to 149831734 11 + TSS region transcription start site region 49925
Tssr49926 5 149832398 to 149832402 4 + TSS region transcription start site region 49926
Gm36187 5 149832529 to 149841753 9224 + lncRNA gene predicted gene, 36187
4930500F04Rik 5 149847747 to 149864280 16533 + lncRNA gene RIKEN cDNA 4930500F04 gene
Tssr49927 5 149847755 to 149847765 10 + TSS region transcription start site region 49927
Gm43450 5 149868748 to 149871409 2661 - lincRNA gene predicted gene 43450
Gm43452 5 149895129 to 149896119 990 - lincRNA gene predicted gene 43452
Gm36241 5 149909297 to 149911252 1955 + lncRNA gene predicted gene, 36241
Gm38754 5 149932070 to 149947557 15487 - lncRNA gene predicted gene, 38754
Gm21048 5 150001805 to 150003314 1509 - pseudogene predicted gene, 21048
Rxfp2 5 150018675 to 150082184 63509 + protein coding gene relaxin/insulin-like family peptide receptor 2
Tssr49928 5 150018783 to 150018799 16 + TSS region transcription start site region 49928
1700040A12Rik 5 150022478 to 150022742 264 unclassified gene RIKEN cDNA 1700040A12 gene
Gm42558 5 150022479 to 150022743 264 + sense intronic lncRNA gene predicted gene 42558
Cpgi17102 5 150022541 to 150022893 352 CpG island CpG island 17102
Tssr54660 5 150022732 to 150022766 34 - TSS region transcription start site region 54660
Gm38755 5 150061488 to 150063618 2130 - lncRNA gene predicted gene, 38755
Tssr54661 5 150062151 to 150062177 26 - TSS region transcription start site region 54661
Cpgi17103 5 150067084 to 150067344 260 CpG island CpG island 17103
Gm42557 5 150067258 to 150082795 15537 - antisense lncRNA gene predicted gene 42557
Tssr49929 5 150080596 to 150080618 22 + TSS region transcription start site region 49929
Tssr49930 5 150080636 to 150080645 9 + TSS region transcription start site region 49930
D5Mit122 5 150116320 to 150116477 157 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 122
Cpgi17104 5 150118379 to 150119239 860 CpG island CpG island 17104
Tssr49931 5 150118626 to 150118684 58 + TSS region transcription start site region 49931
Fry 5 150118645 to 150497753 379108 + protein coding gene FRY microtubule binding protein
Tssr1760 5 150129783 to 150129784 1 + TSS region transcription start site region 1760
D5Mit1000 5 150129844 to 150129965 121 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 1000
Tssr49932 5 150142634 to 150142645 11 + TSS region transcription start site region 49932
Tssr49933 5 150152886 to 150152887 1 + TSS region transcription start site region 49933
D5Mit286.2 5 150164142 to 150164279 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 286.2
D5Mit286 5 150164291 to 150164428 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 286
D5Dcr10 5 150164309 to 150164408 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 10