Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:149437084-150697344

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155 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17096 5 149439440 to 149439891 451 CpG island CpG island 17096
Tssr49908 5 149439649 to 149439663 14 + TSS region transcription start site region 49908
Tex26 5 149439660 to 149470979 31319 + protein coding gene testis expressed 26
Tssr49909 5 149439668 to 149439689 21 + TSS region transcription start site region 49909
Tssr49910 5 149439707 to 149439721 14 + TSS region transcription start site region 49910
Cpgi17097 5 149440214 to 149440466 252 CpG island CpG island 17097
Tssr49911 5 149441827 to 149441840 13 + TSS region transcription start site region 49911
Tssr49912 5 149441841 to 149441851 10 + TSS region transcription start site region 49912
Tssr49913 5 149441853 to 149441880 27 + TSS region transcription start site region 49913
4933425D22Rik 5 149441861 to 149443581 1720 + sense intronic lncRNA gene RIKEN cDNA 4933425D22 gene
Tssr49914 5 149441882 to 149441918 36 + TSS region transcription start site region 49914
Tssr49915 5 149458788 to 149458798 10 + TSS region transcription start site region 49915
Gm15997 5 149489056 to 149538030 48974 - antisense lncRNA gene predicted gene 15997
Gm2566 5 149502503 to 149503052 549 - pseudogene predicted gene 2566
Tssr49916 5 149527451 to 149527458 7 + TSS region transcription start site region 49916
Wdr95 5 149528679 to 149611894 83215 + protein coding gene WD40 repeat domain 95
D5Mit34 5 149554222 to 149554343 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 34
Gm35763 5 149569978 to 149584442 14464 - lncRNA gene predicted gene, 35763
Tssr1759 5 149587985 to 149587986 1 + TSS region transcription start site region 1759
D5Dcr9 5 149610994 to 149611097 103 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 9
Hsph1 5 149616843 to 149637155 20312 - protein coding gene heat shock 105kDa/110kDa protein 1
Tssr54641 5 149618787 to 149618805 18 - TSS region transcription start site region 54641
Tssr54642 5 149618995 to 149619014 19 - TSS region transcription start site region 54642
Tssr54643 5 149619077 to 149619088 11 - TSS region transcription start site region 54643
Tssr54644 5 149619170 to 149619180 10 - TSS region transcription start site region 54644
Tssr54645 5 149619957 to 149619971 14 - TSS region transcription start site region 54645
Cpgi17098 5 149635526 to 149636982 1456 CpG island CpG island 17098
Tssr54646 5 149636164 to 149636190 26 - TSS region transcription start site region 54646
Tssr54647 5 149636198 to 149636213 15 - TSS region transcription start site region 54647
Tssr54648 5 149636233 to 149636253 20 - TSS region transcription start site region 54648
Tssr54649 5 149636272 to 149636291 19 - TSS region transcription start site region 54649
Tssr54650 5 149636331 to 149636339 8 - TSS region transcription start site region 54650
Tssr49917 5 149636410 to 149636455 45 + TSS region transcription start site region 49917
Tssr49918 5 149636500 to 149636524 24 + TSS region transcription start site region 49918
Tssr49919 5 149636527 to 149636539 12 + TSS region transcription start site region 49919
Tssr54651 5 149636663 to 149636695 32 - TSS region transcription start site region 54651
Tssr49920 5 149636817 to 149636841 24 + TSS region transcription start site region 49920
Gm45954 5 149639472 to 149640346 874 + lncRNA gene predicted gene, 45954
Tssr49921 5 149641577 to 149641615 38 + TSS region transcription start site region 49921
Gm20005 5 149641610 to 149647790 6180 + lincRNA gene predicted gene, 20005
Gm5566 5 149660765 to 149661223 458 - pseudogene predicted pseudogene 5566
Cpgi17099 5 149678003 to 149679448 1445 CpG island CpG island 17099
Tssr49922 5 149678208 to 149678221 13 + TSS region transcription start site region 49922
Tssr49923 5 149678224 to 149678241 17 + TSS region transcription start site region 49923
B3glct 5 149678230 to 149762599 84369 + protein coding gene beta-3-glucosyltransferase
Tssr49924 5 149678246 to 149678304 58 + TSS region transcription start site region 49924
Tssr54652 5 149680178 to 149680180 2 - TSS region transcription start site region 54652
Gm36141 5 149742280 to 149769514 27234 - lncRNA gene predicted gene, 36141
Cpgi17100 5 149749200 to 149749440 240 CpG island CpG island 17100
Gm38587 5 149763182 to 149766083 2901 + lncRNA gene predicted gene, 38587
Tssr54653 5 149769485 to 149769523 38 - TSS region transcription start site region 54653
Gm21221 5 149801990 to 149811751 9761 - lincRNA gene predicted gene, 21221
Tssr54654 5 149802548 to 149802574 26 - TSS region transcription start site region 54654
Tssr54655 5 149814633 to 149814636 3 - TSS region transcription start site region 54655
Tssr54656 5 149819992 to 149819996 4 - TSS region transcription start site region 54656
Tssr54657 5 149825337 to 149825347 10 - TSS region transcription start site region 54657
Tssr54658 5 149827662 to 149827666 4 - TSS region transcription start site region 54658
Cpgi17101 5 149831412 to 149831786 374 CpG island CpG island 17101
Tssr54659 5 149831583 to 149831594 11 - TSS region transcription start site region 54659
Tssr49925 5 149831723 to 149831734 11 + TSS region transcription start site region 49925
Tssr49926 5 149832398 to 149832402 4 + TSS region transcription start site region 49926
Gm36187 5 149832529 to 149841753 9224 + lncRNA gene predicted gene, 36187
4930500F04Rik 5 149847747 to 149864280 16533 + lncRNA gene RIKEN cDNA 4930500F04 gene
Tssr49927 5 149847755 to 149847765 10 + TSS region transcription start site region 49927
Gm43450 5 149868748 to 149871409 2661 - lincRNA gene predicted gene 43450
Gm43452 5 149895129 to 149896119 990 - lincRNA gene predicted gene 43452
Gm36241 5 149909297 to 149911252 1955 + lncRNA gene predicted gene, 36241
Gm38754 5 149932070 to 149947557 15487 - lncRNA gene predicted gene, 38754
Gm21048 5 150001805 to 150003314 1509 - pseudogene predicted gene, 21048
Rxfp2 5 150018675 to 150082184 63509 + protein coding gene relaxin/insulin-like family peptide receptor 2
Tssr49928 5 150018783 to 150018799 16 + TSS region transcription start site region 49928
1700040A12Rik 5 150022478 to 150022742 264 unclassified gene RIKEN cDNA 1700040A12 gene
Gm42558 5 150022479 to 150022743 264 + sense intronic lncRNA gene predicted gene 42558
Cpgi17102 5 150022541 to 150022893 352 CpG island CpG island 17102
Tssr54660 5 150022732 to 150022766 34 - TSS region transcription start site region 54660
Gm38755 5 150061488 to 150063618 2130 - lncRNA gene predicted gene, 38755
Tssr54661 5 150062151 to 150062177 26 - TSS region transcription start site region 54661
Cpgi17103 5 150067084 to 150067344 260 CpG island CpG island 17103
Gm42557 5 150067258 to 150082795 15537 - antisense lncRNA gene predicted gene 42557
Tssr49929 5 150080596 to 150080618 22 + TSS region transcription start site region 49929
Tssr49930 5 150080636 to 150080645 9 + TSS region transcription start site region 49930
D5Mit122 5 150116320 to 150116477 157 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 122
Cpgi17104 5 150118379 to 150119239 860 CpG island CpG island 17104
Tssr49931 5 150118626 to 150118684 58 + TSS region transcription start site region 49931
Fry 5 150118645 to 150497753 379108 + protein coding gene FRY microtubule binding protein
Tssr1760 5 150129783 to 150129784 1 + TSS region transcription start site region 1760
D5Mit1000 5 150129844 to 150129965 121 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 1000
Tssr49932 5 150142634 to 150142645 11 + TSS region transcription start site region 49932
Tssr49933 5 150152886 to 150152887 1 + TSS region transcription start site region 49933
D5Mit286.2 5 150164142 to 150164279 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 286.2
D5Mit286 5 150164291 to 150164428 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 286
D5Dcr10 5 150164309 to 150164408 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 10
Cpgi17105 5 150195778 to 150195993 215 CpG island CpG island 17105
Tssr49934 5 150196396 to 150196454 58 + TSS region transcription start site region 49934
Tssr49935 5 150197123 to 150197128 5 + TSS region transcription start site region 49935
Gm36378 5 150243863 to 150244250 387 + pseudogene predicted gene, 36378
Tssr49936 5 150259616 to 150259631 15 + TSS region transcription start site region 49936
Tssr49937 5 150259736 to 150259748 12 + TSS region transcription start site region 49937
Tssr49938 5 150259813 to 150259829 16 + TSS region transcription start site region 49938
Tssr49939 5 150259852 to 150259892 40 + TSS region transcription start site region 49939
Tssr49940 5 150259898 to 150259911 13 + TSS region transcription start site region 49940
Tssr49941 5 150259922 to 150259936 14 + TSS region transcription start site region 49941
Tssr49942 5 150259959 to 150260010 51 + TSS region transcription start site region 49942
Tssr49943 5 150260130 to 150260141 11 + TSS region transcription start site region 49943
Tssr49944 5 150260156 to 150260261 105 + TSS region transcription start site region 49944
Gm42556 5 150283995 to 150299441 15446 - antisense lncRNA gene predicted gene 42556
Tssr49945 5 150295382 to 150295433 51 + TSS region transcription start site region 49945
Gm36299 5 150408301 to 150410358 2057 + lncRNA gene predicted gene, 36299
Tssr1761 5 150409131 to 150409181 50 + TSS region transcription start site region 1761
Tssr49946 5 150418419 to 150418434 15 + TSS region transcription start site region 49946
Cpgi17106 5 150436682 to 150437268 586 CpG island CpG island 17106
Tssr49947 5 150445719 to 150445730 11 + TSS region transcription start site region 49947
Gm18753 5 150446782 to 150447347 565 + pseudogene predicted gene, 18753
Tssr49948 5 150457730 to 150457752 22 + TSS region transcription start site region 49948
Tssr49949 5 150496477 to 150496480 3 + TSS region transcription start site region 49949
Tssr49950 5 150496983 to 150496989 6 + TSS region transcription start site region 49950
Gm5 5 150499747 to 150502219 2472 - lincRNA gene predicted gene 5
Zar1l 5 150507055 to 150518164 11109 - protein coding gene zygote arrest 1-like
Gm15933 5 150509694 to 150511338 1644 - pseudogene predicted gene 15933
Cpgi17107 5 150522400 to 150523043 643 CpG island CpG island 17107
Tssr54662 5 150522540 to 150522566 26 - TSS region transcription start site region 54662
Tssr49951 5 150522599 to 150522637 38 + TSS region transcription start site region 49951
Brca2 5 150522630 to 150570329 47699 + protein coding gene breast cancer 2, early onset
Tssr49952 5 150522646 to 150522670 24 + TSS region transcription start site region 49952
Gm25284 5 150547313 to 150547453 140 - snRNA gene predicted gene, 25284
D5Bay1 5 150548229 to 150548459 230 DNA segment DNA segment, Chr 5, Baylor 1
Gm23641 5 150551707 to 150551807 100 - snRNA gene predicted gene, 23641
Gm42529 5 150558429 to 150561015 2586 - antisense lncRNA gene predicted gene 42529
Gm42531 5 150562311 to 150566358 4047 + sense intronic lncRNA gene predicted gene 42531
Tssr54663 5 150566420 to 150566425 5 - TSS region transcription start site region 54663
Tssr49953 5 150566509 to 150566542 33 + TSS region transcription start site region 49953
Gm43690 5 150570833 to 150571098 265 - lincRNA gene predicted gene 43690
N4bp2l1 5 150571643 to 150594525 22882 - protein coding gene NEDD4 binding protein 2-like 1
Tssr54664 5 150583794 to 150583800 6 - TSS region transcription start site region 54664
Cpgi17108 5 150593160 to 150594889 1729 CpG island CpG island 17108
Tssr54665 5 150594471 to 150594488 17 - TSS region transcription start site region 54665
Tssr54666 5 150594493 to 150594535 42 - TSS region transcription start site region 54666
Gm43598 5 150597062 to 150599540 2478 - lincRNA gene predicted gene 43598
Cpgi17109 5 150598376 to 150598586 210 CpG island CpG island 17109
Gm43597 5 150599932 to 150607003 7071 - lincRNA gene predicted gene 43597
N4bp2l2 5 150608007 to 150666183 58176 - protein coding gene NEDD4 binding protein 2-like 2
Cpgi17110 5 150665009 to 150665791 782 CpG island CpG island 17110
Tssr54667 5 150665212 to 150665226 14 - TSS region transcription start site region 54667
Tssr49954 5 150665297 to 150665308 11 + TSS region transcription start site region 49954
Tssr54668 5 150665315 to 150665377 62 - TSS region transcription start site region 54668
Tssr54669 5 150665417 to 150665444 27 - TSS region transcription start site region 54669
Tssr54670 5 150665560 to 150665606 46 - TSS region transcription start site region 54670
Gm40353 5 150671178 to 150703016 31838 + protein coding gene predicted gene, 40353
Cpgi17111 5 150673306 to 150674786 1480 CpG island CpG island 17111
Pds5b 5 150673744 to 150810669 136925 + protein coding gene PDS5 cohesin associated factor B
Tssr49955 5 150673752 to 150673817 65 + TSS region transcription start site region 49955
Tssr49956 5 150673846 to 150673877 31 + TSS region transcription start site region 49956
Tssr49957 5 150673884 to 150673937 53 + TSS region transcription start site region 49957
D230040J21Rik 5 150678388 to 150681100 2712 unclassified gene RIKEN cDNA D230040J21 gene
Tssr49958 5 150684307 to 150684310 3 + TSS region transcription start site region 49958