Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:149206843-150047155

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd7k 5 119806972 to 149423861 29616889 QTL Nidd7 on KK-A
Uspl1 5 149184560 to 149215434 30874 + protein coding gene ubiquitin specific peptidase like 1
Cpgi17092 5 149228972 to 149229495 523 CpG island CpG island 17092
n-TNgtt14 5 149229001 to 149229074 73 - tRNA gene nuclear encoded tRNA asparagine 14 (anticodon GTT)
Tssr49882 5 149229213 to 149229242 29 + TSS region transcription start site region 49882
2310047D07Rik 5 149231332 to 149237984 6652 + lincRNA gene RIKEN cDNA 2310047D07 gene
Gm29264 5 149234816 to 149247682 12866 - lincRNA gene predicted gene 29264
Tssr49883 5 149235270 to 149235287 17 + TSS region transcription start site region 49883
Gm24105 5 149236812 to 149248644 11832 - lncRNA gene predicted gene, 24105
Tssr54629 5 149244687 to 149244698 11 - TSS region transcription start site region 54629
Tssr54630 5 149244731 to 149244742 11 - TSS region transcription start site region 54630
Tssr54631 5 149244752 to 149244763 11 - TSS region transcription start site region 54631
Tssr54632 5 149244779 to 149244790 11 - TSS region transcription start site region 54632
Tssr49884 5 149244912 to 149244937 25 + TSS region transcription start site region 49884
Tssr49885 5 149244941 to 149244951 10 + TSS region transcription start site region 49885
Tssr49886 5 149245941 to 149245967 26 + TSS region transcription start site region 49886
Tssr49887 5 149246341 to 149246356 15 + TSS region transcription start site region 49887
Tssr49888 5 149247439 to 149247454 15 + TSS region transcription start site region 49888
Alox5ap 5 149265004 to 149288153 23149 + protein coding gene arachidonate 5-lipoxygenase activating protein
Tssr49889 5 149265035 to 149265058 23 + TSS region transcription start site region 49889
Tssr49890 5 149265077 to 149265088 11 + TSS region transcription start site region 49890
Tssr54633 5 149267047 to 149267079 32 - TSS region transcription start site region 54633
n-R5s180 5 149281118 to 149281223 105 - rRNA gene nuclear encoded rRNA 5S 180
Gm19719 5 149282752 to 149287868 5116 - antisense lncRNA gene predicted gene, 19719
Cpgi17093 5 149287400 to 149287861 461 CpG island CpG island 17093
Tssr49891 5 149287690 to 149287722 32 + TSS region transcription start site region 49891
Tssr49892 5 149289019 to 149289043 24 + TSS region transcription start site region 49892
Tssr49893 5 149289282 to 149289308 26 + TSS region transcription start site region 49893
Tssr49894 5 149289320 to 149289341 21 + TSS region transcription start site region 49894
Tssr49895 5 149289630 to 149289643 13 + TSS region transcription start site region 49895
Gm35620 5 149316608 to 149323520 6912 - lncRNA gene predicted gene, 35620
Gm35704 5 149346868 to 149348528 1660 - lncRNA gene predicted gene, 35704
Gm38753 5 149361018 to 149367681 6663 - lncRNA gene predicted gene, 38753
Cpgi17094 5 149363404 to 149363653 249 CpG island CpG island 17094
Tssr49896 5 149364313 to 149364325 12 + TSS region transcription start site region 49896
Tssr54634 5 149367059 to 149367068 9 - TSS region transcription start site region 54634
Tssr54635 5 149367078 to 149367085 7 - TSS region transcription start site region 54635
Tssr54636 5 149367097 to 149367102 5 - TSS region transcription start site region 54636
Tssr54637 5 149367117 to 149367124 7 - TSS region transcription start site region 54637
Tssr54638 5 149367131 to 149367160 29 - TSS region transcription start site region 54638
Tssr54639 5 149367162 to 149367171 9 - TSS region transcription start site region 54639
Tssr49897 5 149367551 to 149367583 32 + TSS region transcription start site region 49897
Tssr49898 5 149367590 to 149367607 17 + TSS region transcription start site region 49898
BC028471 5 149367710 to 149393379 25669 + lincRNA gene cDNA sequence BC028471
Tssr54640 5 149368167 to 149368185 18 - TSS region transcription start site region 54640
Tssr49899 5 149368385 to 149368401 16 + TSS region transcription start site region 49899
Tssr49900 5 149368413 to 149368423 10 + TSS region transcription start site region 49900
Tssr49901 5 149368444 to 149368461 17 + TSS region transcription start site region 49901
Gm20488 5 149368476 to 149430682 62206 + unclassified non-coding RNA gene predicted gene 20488
Tssr49902 5 149368486 to 149368506 20 + TSS region transcription start site region 49902
Tssr49903 5 149369126 to 149369136 10 + TSS region transcription start site region 49903
Tssr49904 5 149374400 to 149374417 17 + TSS region transcription start site region 49904
Gm43152 5 149399490 to 149401127 1637 + unclassified gene predicted gene 43152
Cpgi17095 5 149411606 to 149412319 713 CpG island CpG island 17095
Medag 5 149411749 to 149431723 19974 + protein coding gene mesenteric estrogen dependent adipogenesis
Tssr49905 5 149411791 to 149411811 20 + TSS region transcription start site region 49905
Tssr49906 5 149412098 to 149412138 40 + TSS region transcription start site region 49906
Gm43151 5 149423363 to 149425099 1736 - antisense lncRNA gene predicted gene 43151
D5Mit169 5 149423749 to 149423861 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 169
Gm43150 5 149425653 to 149428962 3309 - antisense lncRNA gene predicted gene 43150
Tssr49907 5 149427118 to 149427160 42 + TSS region transcription start site region 49907
Cpgi17096 5 149439440 to 149439891 451 CpG island CpG island 17096
Tssr49908 5 149439649 to 149439663 14 + TSS region transcription start site region 49908
Tex26 5 149439660 to 149470979 31319 + protein coding gene testis expressed 26
Tssr49909 5 149439668 to 149439689 21 + TSS region transcription start site region 49909
Tssr49910 5 149439707 to 149439721 14 + TSS region transcription start site region 49910
Cpgi17097 5 149440214 to 149440466 252 CpG island CpG island 17097
Tssr49911 5 149441827 to 149441840 13 + TSS region transcription start site region 49911
Tssr49912 5 149441841 to 149441851 10 + TSS region transcription start site region 49912
Tssr49913 5 149441853 to 149441880 27 + TSS region transcription start site region 49913
4933425D22Rik 5 149441861 to 149443581 1720 + sense intronic lncRNA gene RIKEN cDNA 4933425D22 gene
Tssr49914 5 149441882 to 149441918 36 + TSS region transcription start site region 49914
Tssr49915 5 149458788 to 149458798 10 + TSS region transcription start site region 49915
Gm15997 5 149489056 to 149538030 48974 - antisense lncRNA gene predicted gene 15997
Gm2566 5 149502503 to 149503052 549 - pseudogene predicted gene 2566
Tssr49916 5 149527451 to 149527458 7 + TSS region transcription start site region 49916
Wdr95 5 149528679 to 149611894 83215 + protein coding gene WD40 repeat domain 95
D5Mit34 5 149554222 to 149554343 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 34
Gm35763 5 149569978 to 149584442 14464 - lncRNA gene predicted gene, 35763
Tssr1759 5 149587985 to 149587986 1 + TSS region transcription start site region 1759
D5Dcr9 5 149610994 to 149611097 103 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 9
Hsph1 5 149616843 to 149637155 20312 - protein coding gene heat shock 105kDa/110kDa protein 1
Tssr54641 5 149618787 to 149618805 18 - TSS region transcription start site region 54641
Tssr54642 5 149618995 to 149619014 19 - TSS region transcription start site region 54642
Tssr54643 5 149619077 to 149619088 11 - TSS region transcription start site region 54643
Tssr54644 5 149619170 to 149619180 10 - TSS region transcription start site region 54644
Tssr54645 5 149619957 to 149619971 14 - TSS region transcription start site region 54645
Cpgi17098 5 149635526 to 149636982 1456 CpG island CpG island 17098
Tssr54646 5 149636164 to 149636190 26 - TSS region transcription start site region 54646
Tssr54647 5 149636198 to 149636213 15 - TSS region transcription start site region 54647
Tssr54648 5 149636233 to 149636253 20 - TSS region transcription start site region 54648
Tssr54649 5 149636272 to 149636291 19 - TSS region transcription start site region 54649
Tssr54650 5 149636331 to 149636339 8 - TSS region transcription start site region 54650
Tssr49917 5 149636410 to 149636455 45 + TSS region transcription start site region 49917
Tssr49918 5 149636500 to 149636524 24 + TSS region transcription start site region 49918
Tssr49919 5 149636527 to 149636539 12 + TSS region transcription start site region 49919
Tssr54651 5 149636663 to 149636695 32 - TSS region transcription start site region 54651
Tssr49920 5 149636817 to 149636841 24 + TSS region transcription start site region 49920
Gm45954 5 149639472 to 149640346 874 + lncRNA gene predicted gene, 45954
Tssr49921 5 149641577 to 149641615 38 + TSS region transcription start site region 49921
Gm20005 5 149641610 to 149647790 6180 + lincRNA gene predicted gene, 20005
Gm5566 5 149660765 to 149661223 458 - pseudogene predicted pseudogene 5566
Cpgi17099 5 149678003 to 149679448 1445 CpG island CpG island 17099
Tssr49922 5 149678208 to 149678221 13 + TSS region transcription start site region 49922
Tssr49923 5 149678224 to 149678241 17 + TSS region transcription start site region 49923
B3glct 5 149678230 to 149762599 84369 + protein coding gene beta-3-glucosyltransferase
Tssr49924 5 149678246 to 149678304 58 + TSS region transcription start site region 49924
Tssr54652 5 149680178 to 149680180 2 - TSS region transcription start site region 54652
Gm36141 5 149742280 to 149769514 27234 - lncRNA gene predicted gene, 36141
Cpgi17100 5 149749200 to 149749440 240 CpG island CpG island 17100
Gm38587 5 149763182 to 149766083 2901 + lncRNA gene predicted gene, 38587
Tssr54653 5 149769485 to 149769523 38 - TSS region transcription start site region 54653
Gm21221 5 149801990 to 149811751 9761 - lincRNA gene predicted gene, 21221
Tssr54654 5 149802548 to 149802574 26 - TSS region transcription start site region 54654
Tssr54655 5 149814633 to 149814636 3 - TSS region transcription start site region 54655
Tssr54656 5 149819992 to 149819996 4 - TSS region transcription start site region 54656
Tssr54657 5 149825337 to 149825347 10 - TSS region transcription start site region 54657
Tssr54658 5 149827662 to 149827666 4 - TSS region transcription start site region 54658
Cpgi17101 5 149831412 to 149831786 374 CpG island CpG island 17101
Tssr54659 5 149831583 to 149831594 11 - TSS region transcription start site region 54659
Tssr49925 5 149831723 to 149831734 11 + TSS region transcription start site region 49925
Tssr49926 5 149832398 to 149832402 4 + TSS region transcription start site region 49926
Gm36187 5 149832529 to 149841753 9224 + lncRNA gene predicted gene, 36187
4930500F04Rik 5 149847747 to 149864280 16533 + lncRNA gene RIKEN cDNA 4930500F04 gene
Tssr49927 5 149847755 to 149847765 10 + TSS region transcription start site region 49927
Gm43450 5 149868748 to 149871409 2661 - lincRNA gene predicted gene 43450
Gm43452 5 149895129 to 149896119 990 - lincRNA gene predicted gene 43452
Gm36241 5 149909297 to 149911252 1955 + lncRNA gene predicted gene, 36241
Gm38754 5 149932070 to 149947557 15487 - lncRNA gene predicted gene, 38754
Gm21048 5 150001805 to 150003314 1509 - pseudogene predicted gene, 21048
Rxfp2 5 150018675 to 150082184 63509 + protein coding gene relaxin/insulin-like family peptide receptor 2
Tssr49928 5 150018783 to 150018799 16 + TSS region transcription start site region 49928
1700040A12Rik 5 150022478 to 150022742 264 unclassified gene RIKEN cDNA 1700040A12 gene
Gm42558 5 150022479 to 150022743 264 + sense intronic lncRNA gene predicted gene 42558
Cpgi17102 5 150022541 to 150022893 352 CpG island CpG island 17102
Tssr54660 5 150022732 to 150022766 34 - TSS region transcription start site region 54660