Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:149189320-149389341

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Uspl1 5 149184560 to 149215434 30874 + protein coding gene ubiquitin specific peptidase like 1
Cpgi17092 5 149228972 to 149229495 523 CpG island CpG island 17092
n-TNgtt14 5 149229001 to 149229074 73 - tRNA gene nuclear encoded tRNA asparagine 14 (anticodon GTT)
Tssr49882 5 149229213 to 149229242 29 + TSS region transcription start site region 49882
2310047D07Rik 5 149231332 to 149237984 6652 + lincRNA gene RIKEN cDNA 2310047D07 gene
Gm29264 5 149234816 to 149247682 12866 - lincRNA gene predicted gene 29264
Tssr49883 5 149235270 to 149235287 17 + TSS region transcription start site region 49883
Gm24105 5 149236812 to 149248644 11832 - lncRNA gene predicted gene, 24105
Tssr54629 5 149244687 to 149244698 11 - TSS region transcription start site region 54629
Tssr54630 5 149244731 to 149244742 11 - TSS region transcription start site region 54630
Tssr54631 5 149244752 to 149244763 11 - TSS region transcription start site region 54631
Tssr54632 5 149244779 to 149244790 11 - TSS region transcription start site region 54632
Tssr49884 5 149244912 to 149244937 25 + TSS region transcription start site region 49884
Tssr49885 5 149244941 to 149244951 10 + TSS region transcription start site region 49885
Tssr49886 5 149245941 to 149245967 26 + TSS region transcription start site region 49886
Tssr49887 5 149246341 to 149246356 15 + TSS region transcription start site region 49887
Tssr49888 5 149247439 to 149247454 15 + TSS region transcription start site region 49888
Alox5ap 5 149265004 to 149288153 23149 + protein coding gene arachidonate 5-lipoxygenase activating protein
Tssr49889 5 149265035 to 149265058 23 + TSS region transcription start site region 49889
Tssr49890 5 149265077 to 149265088 11 + TSS region transcription start site region 49890
Tssr54633 5 149267047 to 149267079 32 - TSS region transcription start site region 54633
n-R5s180 5 149281118 to 149281223 105 - rRNA gene nuclear encoded rRNA 5S 180
Gm19719 5 149282752 to 149287868 5116 - antisense lncRNA gene predicted gene, 19719
Cpgi17093 5 149287400 to 149287861 461 CpG island CpG island 17093
Tssr49891 5 149287690 to 149287722 32 + TSS region transcription start site region 49891
Tssr49892 5 149289019 to 149289043 24 + TSS region transcription start site region 49892
Tssr49893 5 149289282 to 149289308 26 + TSS region transcription start site region 49893
Tssr49894 5 149289320 to 149289341 21 + TSS region transcription start site region 49894
Tssr49895 5 149289630 to 149289643 13 + TSS region transcription start site region 49895
Gm35620 5 149316608 to 149323520 6912 - lncRNA gene predicted gene, 35620
Gm35704 5 149346868 to 149348528 1660 - lncRNA gene predicted gene, 35704
Gm38753 5 149361018 to 149367681 6663 - lncRNA gene predicted gene, 38753
Cpgi17094 5 149363404 to 149363653 249 CpG island CpG island 17094
Tssr49896 5 149364313 to 149364325 12 + TSS region transcription start site region 49896
Tssr54634 5 149367059 to 149367068 9 - TSS region transcription start site region 54634
Tssr54635 5 149367078 to 149367085 7 - TSS region transcription start site region 54635
Tssr54636 5 149367097 to 149367102 5 - TSS region transcription start site region 54636
Tssr54637 5 149367117 to 149367124 7 - TSS region transcription start site region 54637
Tssr54638 5 149367131 to 149367160 29 - TSS region transcription start site region 54638
Tssr54639 5 149367162 to 149367171 9 - TSS region transcription start site region 54639
Tssr49897 5 149367551 to 149367583 32 + TSS region transcription start site region 49897
Tssr49898 5 149367590 to 149367607 17 + TSS region transcription start site region 49898
BC028471 5 149367710 to 149393379 25669 + lincRNA gene cDNA sequence BC028471
Tssr54640 5 149368167 to 149368185 18 - TSS region transcription start site region 54640
Tssr49899 5 149368385 to 149368401 16 + TSS region transcription start site region 49899
Tssr49900 5 149368413 to 149368423 10 + TSS region transcription start site region 49900
Tssr49901 5 149368444 to 149368461 17 + TSS region transcription start site region 49901
Gm20488 5 149368476 to 149430682 62206 + unclassified non-coding RNA gene predicted gene 20488
Tssr49902 5 149368486 to 149368506 20 + TSS region transcription start site region 49902
Tssr49903 5 149369126 to 149369136 10 + TSS region transcription start site region 49903
Tssr49904 5 149374400 to 149374417 17 + TSS region transcription start site region 49904