Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:149049954-149319977

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmgb1 5 149046702 to 149053057 6355 - protein coding gene high mobility group box 1
Tssr54613 5 149050594 to 149050605 11 - TSS region transcription start site region 54613
Cpgi17090 5 149051212 to 149053659 2447 CpG island CpG island 17090
Tssr54614 5 149051302 to 149051313 11 - TSS region transcription start site region 54614
Tssr54615 5 149051378 to 149051390 12 - TSS region transcription start site region 54615
Tssr54616 5 149051393 to 149051455 62 - TSS region transcription start site region 54616
Tssr54617 5 149051604 to 149051624 20 - TSS region transcription start site region 54617
Tssr54618 5 149051698 to 149051708 10 - TSS region transcription start site region 54618
Tssr54619 5 149051900 to 149051979 79 - TSS region transcription start site region 54619
Tssr54620 5 149053038 to 149053053 15 - TSS region transcription start site region 54620
Tssr54621 5 149053060 to 149053071 11 - TSS region transcription start site region 54621
Tssr49872 5 149053195 to 149053209 14 + TSS region transcription start site region 49872
Tssr1757 5 149053214 to 149053230 16 + TSS region transcription start site region 1757
D5Mit287 5 149053859 to 149054007 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 287
Gm30078 5 149067402 to 149069279 1877 + lncRNA gene predicted gene, 30078
Tssr54622 5 149068296 to 149068307 11 - TSS region transcription start site region 54622
Tssr49873 5 149068452 to 149068466 14 + TSS region transcription start site region 49873
Gm38752 5 149090941 to 149107355 16414 + lncRNA gene predicted gene, 38752
Mm2pr 5 149119565 to 149182036 62471 - lincRNA gene macrophage M2 polarization regulator
Tssr54623 5 149127723 to 149127734 11 - TSS region transcription start site region 54623
Gm42787 5 149128584 to 149129957 1373 + lincRNA gene predicted gene 42787
Tssr49874 5 149137064 to 149137078 14 + TSS region transcription start site region 49874
Tssr49875 5 149144257 to 149144283 26 + TSS region transcription start site region 49875
Gm42788 5 149144263 to 149153540 9277 + lincRNA gene predicted gene 42788
Gm23362 5 149145724 to 149145821 97 + snoRNA gene predicted gene, 23362
Gm8615 5 149155108 to 149156209 1101 - pseudogene predicted pseudogene 8615
Tssr49876 5 149157380 to 149157391 11 + TSS region transcription start site region 49876
Tssr49877 5 149157398 to 149157415 17 + TSS region transcription start site region 49877
Tssr49878 5 149175197 to 149175202 5 + TSS region transcription start site region 49878
Tssr1758 5 149180232 to 149180235 3 + TSS region transcription start site region 1758
Tssr54624 5 149181937 to 149181945 8 - TSS region transcription start site region 54624
Gm43332 5 149183183 to 149184226 1043 + lincRNA gene predicted gene 43332
Cpgi17091 5 149183846 to 149185138 1292 CpG island CpG island 17091
Tssr54625 5 149184206 to 149184241 35 - TSS region transcription start site region 54625
Tssr54626 5 149184273 to 149184294 21 - TSS region transcription start site region 54626
Tssr49879 5 149184555 to 149184601 46 + TSS region transcription start site region 49879
Uspl1 5 149184560 to 149215434 30874 + protein coding gene ubiquitin specific peptidase like 1
Tssr49880 5 149184648 to 149184673 25 + TSS region transcription start site region 49880
Tssr49881 5 149184682 to 149184740 58 + TSS region transcription start site region 49881
Tssr54627 5 149184937 to 149184952 15 - TSS region transcription start site region 54627
Tssr54628 5 149184954 to 149184977 23 - TSS region transcription start site region 54628
Cpgi17092 5 149228972 to 149229495 523 CpG island CpG island 17092
n-TNgtt14 5 149229001 to 149229074 73 - tRNA gene nuclear encoded tRNA asparagine 14 (anticodon GTT)
Tssr49882 5 149229213 to 149229242 29 + TSS region transcription start site region 49882
2310047D07Rik 5 149231332 to 149237984 6652 + lincRNA gene RIKEN cDNA 2310047D07 gene
Gm29264 5 149234816 to 149247682 12866 - lincRNA gene predicted gene 29264
Tssr49883 5 149235270 to 149235287 17 + TSS region transcription start site region 49883
Gm24105 5 149236812 to 149248644 11832 - lncRNA gene predicted gene, 24105
Tssr54629 5 149244687 to 149244698 11 - TSS region transcription start site region 54629
Tssr54630 5 149244731 to 149244742 11 - TSS region transcription start site region 54630
Tssr54631 5 149244752 to 149244763 11 - TSS region transcription start site region 54631
Tssr54632 5 149244779 to 149244790 11 - TSS region transcription start site region 54632
Tssr49884 5 149244912 to 149244937 25 + TSS region transcription start site region 49884
Tssr49885 5 149244941 to 149244951 10 + TSS region transcription start site region 49885
Tssr49886 5 149245941 to 149245967 26 + TSS region transcription start site region 49886
Tssr49887 5 149246341 to 149246356 15 + TSS region transcription start site region 49887
Tssr49888 5 149247439 to 149247454 15 + TSS region transcription start site region 49888
Alox5ap 5 149265004 to 149288153 23149 + protein coding gene arachidonate 5-lipoxygenase activating protein
Tssr49889 5 149265035 to 149265058 23 + TSS region transcription start site region 49889
Tssr49890 5 149265077 to 149265088 11 + TSS region transcription start site region 49890
Tssr54633 5 149267047 to 149267079 32 - TSS region transcription start site region 54633
n-R5s180 5 149281118 to 149281223 105 - rRNA gene nuclear encoded rRNA 5S 180
Gm19719 5 149282752 to 149287868 5116 - antisense lncRNA gene predicted gene, 19719
Cpgi17093 5 149287400 to 149287861 461 CpG island CpG island 17093
Tssr49891 5 149287690 to 149287722 32 + TSS region transcription start site region 49891
Tssr49892 5 149289019 to 149289043 24 + TSS region transcription start site region 49892
Tssr49893 5 149289282 to 149289308 26 + TSS region transcription start site region 49893
Tssr49894 5 149289320 to 149289341 21 + TSS region transcription start site region 49894
Tssr49895 5 149289630 to 149289643 13 + TSS region transcription start site region 49895
Gm35620 5 149316608 to 149323520 6912 - lncRNA gene predicted gene, 35620