Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:148897047-149637079

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd7k 5 119806972 to 149423861 29616889 QTL Nidd7 on KK-A
Katnal1 5 148871584 to 148929160 57576 - protein coding gene katanin p60 subunit A-like 1
Gm42791 5 148893775 to 148995147 101372 - protein coding gene predicted gene 42791
Gm43600 5 148926688 to 148926910 222 + pseudogene predicted gene 43600
Cpgi17083 5 148928318 to 148929447 1129 CpG island CpG island 17083
Tssr54588 5 148928585 to 148928618 33 - TSS region transcription start site region 54588
Tssr54589 5 148928619 to 148928659 40 - TSS region transcription start site region 54589
Tssr54590 5 148928699 to 148928713 14 - TSS region transcription start site region 54590
Gm36446 5 148928812 to 148929622 810 + lncRNA gene predicted gene, 36446
Tssr54591 5 148928820 to 148928825 5 - TSS region transcription start site region 54591
Tssr54592 5 148928916 to 148928927 11 - TSS region transcription start site region 54592
Tssr54593 5 148928929 to 148928951 22 - TSS region transcription start site region 54593
Tssr54594 5 148928981 to 148929044 63 - TSS region transcription start site region 54594
Gm15410 5 148946592 to 148948866 2274 - antisense lncRNA gene predicted gene 15410
Gm15406 5 148948897 to 148996566 47669 - lincRNA gene predicted gene 15406
8430423G03Rik 5 148950250 to 148951658 1408 + lincRNA gene RIKEN cDNA 8430423G03 gene
1810059H22Rik 5 148953748 to 148970122 16374 - unclassified non-coding RNA gene RIKEN cDNA 1810059H22 gene
Tssr54595 5 148955757 to 148955762 5 - TSS region transcription start site region 54595
Cpgi17084 5 148959147 to 148959716 569 CpG island CpG island 17084
Tssr49867 5 148959263 to 148959268 5 + TSS region transcription start site region 49867
Gm15409 5 148959278 to 148961712 2434 + lincRNA gene predicted gene 15409
Tssr54596 5 148959280 to 148959309 29 - TSS region transcription start site region 54596
Tssr49868 5 148959319 to 148959340 21 + TSS region transcription start site region 49868
Tssr54597 5 148959454 to 148959489 35 - TSS region transcription start site region 54597
Tssr54598 5 148959559 to 148959574 15 - TSS region transcription start site region 54598
Tssr49869 5 148959791 to 148959810 19 + TSS region transcription start site region 49869
Tssr54599 5 148959975 to 148960001 26 - TSS region transcription start site region 54599
Tssr54600 5 148967971 to 148967976 5 - TSS region transcription start site region 54600
Tssr54601 5 148969839 to 148969859 20 - TSS region transcription start site region 54601
Tssr54602 5 148969870 to 148969913 43 - TSS region transcription start site region 54602
Tssr54603 5 148969917 to 148969939 22 - TSS region transcription start site region 54603
5930430L01Rik 5 148990056 to 148995215 5159 - lincRNA gene RIKEN cDNA 5930430L01 gene
Cpgi17085 5 148995036 to 148995399 363 CpG island CpG island 17085
Tssr54604 5 148995161 to 148995173 12 - TSS region transcription start site region 54604
Tssr54605 5 148995176 to 148995201 25 - TSS region transcription start site region 54605
Tssr54606 5 148995208 to 148995233 25 - TSS region transcription start site region 54606
Gm15411 5 148995651 to 149015813 20162 - unclassified non-coding RNA gene predicted gene 15411
Tssr54607 5 148996543 to 148996571 28 - TSS region transcription start site region 54607
Tssr54608 5 148996608 to 148996620 12 - TSS region transcription start site region 54608
Cpgi17086 5 149006861 to 149007018 157 CpG island CpG island 17086
Tssr49870 5 149006948 to 149006966 18 + TSS region transcription start site region 49870
Gm15408 5 149006962 to 149012776 5814 + lincRNA gene predicted gene 15408
Cpgi17087 5 149015499 to 149015856 357 CpG island CpG island 17087
Tssr54609 5 149015791 to 149015800 9 - TSS region transcription start site region 54609
Tssr54610 5 149015806 to 149015818 12 - TSS region transcription start site region 54610
Tssr54611 5 149015852 to 149015867 15 - TSS region transcription start site region 54611
Tssr54612 5 149015964 to 149015983 19 - TSS region transcription start site region 54612
Tssr49871 5 149016117 to 149016140 23 + TSS region transcription start site region 49871
Cpgi17088 5 149020723 to 149020949 226 CpG island CpG island 17088
Cpgi17089 5 149031211 to 149031814 603 CpG island CpG island 17089
Hmgb1 5 149046702 to 149053057 6355 - protein coding gene high mobility group box 1
Tssr54613 5 149050594 to 149050605 11 - TSS region transcription start site region 54613
Cpgi17090 5 149051212 to 149053659 2447 CpG island CpG island 17090
Tssr54614 5 149051302 to 149051313 11 - TSS region transcription start site region 54614
Tssr54615 5 149051378 to 149051390 12 - TSS region transcription start site region 54615
Tssr54616 5 149051393 to 149051455 62 - TSS region transcription start site region 54616
Tssr54617 5 149051604 to 149051624 20 - TSS region transcription start site region 54617
Tssr54618 5 149051698 to 149051708 10 - TSS region transcription start site region 54618
Tssr54619 5 149051900 to 149051979 79 - TSS region transcription start site region 54619
Tssr54620 5 149053038 to 149053053 15 - TSS region transcription start site region 54620
Tssr54621 5 149053060 to 149053071 11 - TSS region transcription start site region 54621
Tssr49872 5 149053195 to 149053209 14 + TSS region transcription start site region 49872
Tssr1757 5 149053214 to 149053230 16 + TSS region transcription start site region 1757
D5Mit287 5 149053859 to 149054007 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 287
Gm30078 5 149067402 to 149069279 1877 + lncRNA gene predicted gene, 30078
Tssr54622 5 149068296 to 149068307 11 - TSS region transcription start site region 54622
Tssr49873 5 149068452 to 149068466 14 + TSS region transcription start site region 49873
Gm38752 5 149090941 to 149107355 16414 + lncRNA gene predicted gene, 38752
Mm2pr 5 149119565 to 149182036 62471 - lincRNA gene macrophage M2 polarization regulator
Tssr54623 5 149127723 to 149127734 11 - TSS region transcription start site region 54623
Gm42787 5 149128584 to 149129957 1373 + lincRNA gene predicted gene 42787
Tssr49874 5 149137064 to 149137078 14 + TSS region transcription start site region 49874
Tssr49875 5 149144257 to 149144283 26 + TSS region transcription start site region 49875
Gm42788 5 149144263 to 149153540 9277 + lincRNA gene predicted gene 42788
Gm23362 5 149145724 to 149145821 97 + snoRNA gene predicted gene, 23362
Gm8615 5 149155108 to 149156209 1101 - pseudogene predicted pseudogene 8615
Tssr49876 5 149157380 to 149157391 11 + TSS region transcription start site region 49876
Tssr49877 5 149157398 to 149157415 17 + TSS region transcription start site region 49877
Tssr49878 5 149175197 to 149175202 5 + TSS region transcription start site region 49878
Tssr1758 5 149180232 to 149180235 3 + TSS region transcription start site region 1758
Tssr54624 5 149181937 to 149181945 8 - TSS region transcription start site region 54624
Gm43332 5 149183183 to 149184226 1043 + lincRNA gene predicted gene 43332
Cpgi17091 5 149183846 to 149185138 1292 CpG island CpG island 17091
Tssr54625 5 149184206 to 149184241 35 - TSS region transcription start site region 54625
Tssr54626 5 149184273 to 149184294 21 - TSS region transcription start site region 54626
Tssr49879 5 149184555 to 149184601 46 + TSS region transcription start site region 49879
Uspl1 5 149184560 to 149215434 30874 + protein coding gene ubiquitin specific peptidase like 1
Tssr49880 5 149184648 to 149184673 25 + TSS region transcription start site region 49880
Tssr49881 5 149184682 to 149184740 58 + TSS region transcription start site region 49881
Tssr54627 5 149184937 to 149184952 15 - TSS region transcription start site region 54627
Tssr54628 5 149184954 to 149184977 23 - TSS region transcription start site region 54628
Cpgi17092 5 149228972 to 149229495 523 CpG island CpG island 17092
n-TNgtt14 5 149229001 to 149229074 73 - tRNA gene nuclear encoded tRNA asparagine 14 (anticodon GTT)
Tssr49882 5 149229213 to 149229242 29 + TSS region transcription start site region 49882
2310047D07Rik 5 149231332 to 149237984 6652 + lincRNA gene RIKEN cDNA 2310047D07 gene
Gm29264 5 149234816 to 149247682 12866 - lincRNA gene predicted gene 29264
Tssr49883 5 149235270 to 149235287 17 + TSS region transcription start site region 49883
Gm24105 5 149236812 to 149248644 11832 - lncRNA gene predicted gene, 24105
Tssr54629 5 149244687 to 149244698 11 - TSS region transcription start site region 54629
Tssr54630 5 149244731 to 149244742 11 - TSS region transcription start site region 54630
Tssr54631 5 149244752 to 149244763 11 - TSS region transcription start site region 54631
Tssr54632 5 149244779 to 149244790 11 - TSS region transcription start site region 54632
Tssr49884 5 149244912 to 149244937 25 + TSS region transcription start site region 49884
Tssr49885 5 149244941 to 149244951 10 + TSS region transcription start site region 49885
Tssr49886 5 149245941 to 149245967 26 + TSS region transcription start site region 49886
Tssr49887 5 149246341 to 149246356 15 + TSS region transcription start site region 49887
Tssr49888 5 149247439 to 149247454 15 + TSS region transcription start site region 49888
Alox5ap 5 149265004 to 149288153 23149 + protein coding gene arachidonate 5-lipoxygenase activating protein
Tssr49889 5 149265035 to 149265058 23 + TSS region transcription start site region 49889
Tssr49890 5 149265077 to 149265088 11 + TSS region transcription start site region 49890
Tssr54633 5 149267047 to 149267079 32 - TSS region transcription start site region 54633
n-R5s180 5 149281118 to 149281223 105 - rRNA gene nuclear encoded rRNA 5S 180
Gm19719 5 149282752 to 149287868 5116 - antisense lncRNA gene predicted gene, 19719
Cpgi17093 5 149287400 to 149287861 461 CpG island CpG island 17093
Tssr49891 5 149287690 to 149287722 32 + TSS region transcription start site region 49891
Tssr49892 5 149289019 to 149289043 24 + TSS region transcription start site region 49892
Tssr49893 5 149289282 to 149289308 26 + TSS region transcription start site region 49893
Tssr49894 5 149289320 to 149289341 21 + TSS region transcription start site region 49894
Tssr49895 5 149289630 to 149289643 13 + TSS region transcription start site region 49895
Gm35620 5 149316608 to 149323520 6912 - lncRNA gene predicted gene, 35620
Gm35704 5 149346868 to 149348528 1660 - lncRNA gene predicted gene, 35704
Gm38753 5 149361018 to 149367681 6663 - lncRNA gene predicted gene, 38753
Cpgi17094 5 149363404 to 149363653 249 CpG island CpG island 17094
Tssr49896 5 149364313 to 149364325 12 + TSS region transcription start site region 49896
Tssr54634 5 149367059 to 149367068 9 - TSS region transcription start site region 54634
Tssr54635 5 149367078 to 149367085 7 - TSS region transcription start site region 54635
Tssr54636 5 149367097 to 149367102 5 - TSS region transcription start site region 54636
Tssr54637 5 149367117 to 149367124 7 - TSS region transcription start site region 54637
Tssr54638 5 149367131 to 149367160 29 - TSS region transcription start site region 54638
Tssr54639 5 149367162 to 149367171 9 - TSS region transcription start site region 54639
Tssr49897 5 149367551 to 149367583 32 + TSS region transcription start site region 49897
Tssr49898 5 149367590 to 149367607 17 + TSS region transcription start site region 49898
BC028471 5 149367710 to 149393379 25669 + lincRNA gene cDNA sequence BC028471
Tssr54640 5 149368167 to 149368185 18 - TSS region transcription start site region 54640
Tssr49899 5 149368385 to 149368401 16 + TSS region transcription start site region 49899
Tssr49900 5 149368413 to 149368423 10 + TSS region transcription start site region 49900
Tssr49901 5 149368444 to 149368461 17 + TSS region transcription start site region 49901
Gm20488 5 149368476 to 149430682 62206 + unclassified non-coding RNA gene predicted gene 20488
Tssr49902 5 149368486 to 149368506 20 + TSS region transcription start site region 49902
Tssr49903 5 149369126 to 149369136 10 + TSS region transcription start site region 49903
Tssr49904 5 149374400 to 149374417 17 + TSS region transcription start site region 49904
Gm43152 5 149399490 to 149401127 1637 + unclassified gene predicted gene 43152
Cpgi17095 5 149411606 to 149412319 713 CpG island CpG island 17095
Medag 5 149411749 to 149431723 19974 + protein coding gene mesenteric estrogen dependent adipogenesis
Tssr49905 5 149411791 to 149411811 20 + TSS region transcription start site region 49905
Tssr49906 5 149412098 to 149412138 40 + TSS region transcription start site region 49906
Gm43151 5 149423363 to 149425099 1736 - antisense lncRNA gene predicted gene 43151
D5Mit169 5 149423749 to 149423861 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 169
Gm43150 5 149425653 to 149428962 3309 - antisense lncRNA gene predicted gene 43150
Tssr49907 5 149427118 to 149427160 42 + TSS region transcription start site region 49907
Cpgi17096 5 149439440 to 149439891 451 CpG island CpG island 17096
Tssr49908 5 149439649 to 149439663 14 + TSS region transcription start site region 49908
Tex26 5 149439660 to 149470979 31319 + protein coding gene testis expressed 26
Tssr49909 5 149439668 to 149439689 21 + TSS region transcription start site region 49909
Tssr49910 5 149439707 to 149439721 14 + TSS region transcription start site region 49910
Cpgi17097 5 149440214 to 149440466 252 CpG island CpG island 17097
Tssr49911 5 149441827 to 149441840 13 + TSS region transcription start site region 49911
Tssr49912 5 149441841 to 149441851 10 + TSS region transcription start site region 49912
Tssr49913 5 149441853 to 149441880 27 + TSS region transcription start site region 49913
4933425D22Rik 5 149441861 to 149443581 1720 + sense intronic lncRNA gene RIKEN cDNA 4933425D22 gene
Tssr49914 5 149441882 to 149441918 36 + TSS region transcription start site region 49914
Tssr49915 5 149458788 to 149458798 10 + TSS region transcription start site region 49915
Gm15997 5 149489056 to 149538030 48974 - antisense lncRNA gene predicted gene 15997
Gm2566 5 149502503 to 149503052 549 - pseudogene predicted gene 2566
Tssr49916 5 149527451 to 149527458 7 + TSS region transcription start site region 49916
Wdr95 5 149528679 to 149611894 83215 + protein coding gene WD40 repeat domain 95
D5Mit34 5 149554222 to 149554343 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 34
Gm35763 5 149569978 to 149584442 14464 - lncRNA gene predicted gene, 35763
Tssr1759 5 149587985 to 149587986 1 + TSS region transcription start site region 1759
D5Dcr9 5 149610994 to 149611097 103 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 9
Hsph1 5 149616843 to 149637155 20312 - protein coding gene heat shock 105kDa/110kDa protein 1
Tssr54641 5 149618787 to 149618805 18 - TSS region transcription start site region 54641
Tssr54642 5 149618995 to 149619014 19 - TSS region transcription start site region 54642
Tssr54643 5 149619077 to 149619088 11 - TSS region transcription start site region 54643
Tssr54644 5 149619170 to 149619180 10 - TSS region transcription start site region 54644
Tssr54645 5 149619957 to 149619971 14 - TSS region transcription start site region 54645
Cpgi17098 5 149635526 to 149636982 1456 CpG island CpG island 17098
Tssr54646 5 149636164 to 149636190 26 - TSS region transcription start site region 54646
Tssr54647 5 149636198 to 149636213 15 - TSS region transcription start site region 54647
Tssr54648 5 149636233 to 149636253 20 - TSS region transcription start site region 54648
Tssr54649 5 149636272 to 149636291 19 - TSS region transcription start site region 54649
Tssr54650 5 149636331 to 149636339 8 - TSS region transcription start site region 54650
Tssr49917 5 149636410 to 149636455 45 + TSS region transcription start site region 49917
Tssr49918 5 149636500 to 149636524 24 + TSS region transcription start site region 49918
Tssr49919 5 149636527 to 149636539 12 + TSS region transcription start site region 49919
Tssr54651 5 149636663 to 149636695 32 - TSS region transcription start site region 54651
Tssr49920 5 149636817 to 149636841 24 + TSS region transcription start site region 49920