Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:148557950-148997988

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35735 5 148572200 to 148579054 6854 + lncRNA gene predicted gene, 35735
Gm35994 5 148581119 to 148590791 9672 - lncRNA gene predicted gene, 35994
Gm35929 5 148584826 to 148589562 4736 - lncRNA gene predicted gene, 35929
Tssr54580 5 148589869 to 148589877 8 - TSS region transcription start site region 54580
Tssr54581 5 148590750 to 148590771 21 - TSS region transcription start site region 54581
Gm46929 5 148591229 to 148593977 2748 + lncRNA gene predicted gene, 46929
Gm29815 5 148613467 to 148613644 177 - pseudogene predicted gene, 29815
Gm36140 5 148634383 to 148640865 6482 + lncRNA gene predicted gene, 36140
Tssr54582 5 148652606 to 148652608 2 - TSS region transcription start site region 54582
Tssr54583 5 148652642 to 148652690 48 - TSS region transcription start site region 54583
Tssr54584 5 148652720 to 148652769 49 - TSS region transcription start site region 54584
Tssr49863 5 148653074 to 148653094 20 + TSS region transcription start site region 49863
Tssr54585 5 148678445 to 148678449 4 - TSS region transcription start site region 54585
Tssr49864 5 148678906 to 148678925 19 + TSS region transcription start site region 49864
Gm36186 5 148711466 to 148718397 6931 + lincRNA gene predicted gene, 36186
2210417A02Rik 5 148741840 to 148743139 1299 + lincRNA gene RIKEN cDNA 2210417A02 gene
Tssr1756 5 148741849 to 148741890 41 + TSS region transcription start site region 1756
Tssr54586 5 148746809 to 148746821 12 - TSS region transcription start site region 54586
n-R5s179 5 148753323 to 148753440 117 - rRNA gene nuclear encoded rRNA 5S 179
Tssr49865 5 148777950 to 148777988 38 + TSS region transcription start site region 49865
4930505K14Rik 5 148777963 to 148783080 5117 + lincRNA gene RIKEN cDNA 4930505K14 gene
Gm36405 5 148794317 to 148809286 14969 - lncRNA gene predicted gene, 36405
Cpgi17077 5 148794371 to 148794729 358 CpG island CpG island 17077
Cpgi17078 5 148811761 to 148812204 443 CpG island CpG island 17078
Cpgi17079 5 148820496 to 148820777 281 CpG island CpG island 17079
Gm15407 5 148820767 to 148837798 17031 + lincRNA gene predicted gene 15407
Cpgi17080 5 148831745 to 148832220 475 CpG island CpG island 17080
Cpgi17081 5 148837715 to 148837873 158 CpG island CpG island 17081
Tssr49866 5 148866874 to 148866883 9 + TSS region transcription start site region 49866
Tssr54587 5 148867883 to 148867917 34 - TSS region transcription start site region 54587
Katnal1 5 148871584 to 148929160 57576 - protein coding gene katanin p60 subunit A-like 1
Cpgi17082 5 148885828 to 148886200 372 CpG island CpG island 17082
Gm42791 5 148893775 to 148995147 101372 - protein coding gene predicted gene 42791
Gm43600 5 148926688 to 148926910 222 + pseudogene predicted gene 43600
Cpgi17083 5 148928318 to 148929447 1129 CpG island CpG island 17083
Tssr54588 5 148928585 to 148928618 33 - TSS region transcription start site region 54588
Tssr54589 5 148928619 to 148928659 40 - TSS region transcription start site region 54589
Tssr54590 5 148928699 to 148928713 14 - TSS region transcription start site region 54590
Gm36446 5 148928812 to 148929622 810 + lncRNA gene predicted gene, 36446
Tssr54591 5 148928820 to 148928825 5 - TSS region transcription start site region 54591
Tssr54592 5 148928916 to 148928927 11 - TSS region transcription start site region 54592
Tssr54593 5 148928929 to 148928951 22 - TSS region transcription start site region 54593
Tssr54594 5 148928981 to 148929044 63 - TSS region transcription start site region 54594
Gm15410 5 148946592 to 148948866 2274 - antisense lncRNA gene predicted gene 15410
Gm15406 5 148948897 to 148996566 47669 - lincRNA gene predicted gene 15406
8430423G03Rik 5 148950250 to 148951658 1408 + lincRNA gene RIKEN cDNA 8430423G03 gene
1810059H22Rik 5 148953748 to 148970122 16374 - unclassified non-coding RNA gene RIKEN cDNA 1810059H22 gene
Tssr54595 5 148955757 to 148955762 5 - TSS region transcription start site region 54595
Cpgi17084 5 148959147 to 148959716 569 CpG island CpG island 17084
Tssr49867 5 148959263 to 148959268 5 + TSS region transcription start site region 49867
Gm15409 5 148959278 to 148961712 2434 + lincRNA gene predicted gene 15409
Tssr54596 5 148959280 to 148959309 29 - TSS region transcription start site region 54596
Tssr49868 5 148959319 to 148959340 21 + TSS region transcription start site region 49868
Tssr54597 5 148959454 to 148959489 35 - TSS region transcription start site region 54597
Tssr54598 5 148959559 to 148959574 15 - TSS region transcription start site region 54598
Tssr49869 5 148959791 to 148959810 19 + TSS region transcription start site region 49869
Tssr54599 5 148959975 to 148960001 26 - TSS region transcription start site region 54599
Tssr54600 5 148967971 to 148967976 5 - TSS region transcription start site region 54600
Tssr54601 5 148969839 to 148969859 20 - TSS region transcription start site region 54601
Tssr54602 5 148969870 to 148969913 43 - TSS region transcription start site region 54602
Tssr54603 5 148969917 to 148969939 22 - TSS region transcription start site region 54603
5930430L01Rik 5 148990056 to 148995215 5159 - lincRNA gene RIKEN cDNA 5930430L01 gene
Cpgi17085 5 148995036 to 148995399 363 CpG island CpG island 17085
Tssr54604 5 148995161 to 148995173 12 - TSS region transcription start site region 54604
Tssr54605 5 148995176 to 148995201 25 - TSS region transcription start site region 54605
Tssr54606 5 148995208 to 148995233 25 - TSS region transcription start site region 54606
Gm15411 5 148995651 to 149015813 20162 - unclassified non-coding RNA gene predicted gene 15411
Tssr54607 5 148996543 to 148996571 28 - TSS region transcription start site region 54607
Tssr54608 5 148996608 to 148996620 12 - TSS region transcription start site region 54608