Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:148340200-148730202

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc7a1 5 148327410 to 148399904 72494 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
Tssr54554 5 148342108 to 148342156 48 - TSS region transcription start site region 54554
Tssr54555 5 148371525 to 148371532 7 - TSS region transcription start site region 54555
Tssr54556 5 148379568 to 148379572 4 - TSS region transcription start site region 54556
Tssr54557 5 148392810 to 148392816 6 - TSS region transcription start site region 54557
Tssr49856 5 148398876 to 148398902 26 + TSS region transcription start site region 49856
Cpgi17074 5 148398936 to 148400117 1181 CpG island CpG island 17074
Tssr49857 5 148399633 to 148399639 6 + TSS region transcription start site region 49857
Tssr54558 5 148399764 to 148399782 18 - TSS region transcription start site region 54558
Tssr54559 5 148399797 to 148399850 53 - TSS region transcription start site region 54559
Tssr54560 5 148399851 to 148399862 11 - TSS region transcription start site region 54560
Tssr54561 5 148399863 to 148399872 9 - TSS region transcription start site region 54561
Tssr54562 5 148399873 to 148399889 16 - TSS region transcription start site region 54562
Tssr54563 5 148399901 to 148399912 11 - TSS region transcription start site region 54563
Tssr49858 5 148399992 to 148400009 17 + TSS region transcription start site region 49858
Tssr54564 5 148400013 to 148400038 25 - TSS region transcription start site region 54564
Tssr49859 5 148400016 to 148400029 13 + TSS region transcription start site region 49859
Tssr49860 5 148400146 to 148400149 3 + TSS region transcription start site region 49860
Gm19617 5 148456838 to 148457145 307 + pseudogene predicted gene, 19617
Tssr54565 5 148489376 to 148489384 8 - TSS region transcription start site region 54565
Tssr49861 5 148489571 to 148489584 13 + TSS region transcription start site region 49861
4930549L11Rik 5 148489940 to 148490442 502 unclassified gene RIKEN cDNA 4930549L11 gene
Ubl3 5 148504635 to 148552789 48154 - protein coding gene ubiquitin-like 3
Tssr54566 5 148505848 to 148505861 13 - TSS region transcription start site region 54566
Tssr54567 5 148509351 to 148509362 11 - TSS region transcription start site region 54567
Tssr54568 5 148509364 to 148509381 17 - TSS region transcription start site region 54568
Tssr54569 5 148535200 to 148535202 2 - TSS region transcription start site region 54569
Cpgi17075 5 148551365 to 148551625 260 CpG island CpG island 17075
Tssr54570 5 148551648 to 148551681 33 - TSS region transcription start site region 54570
Cpgi17076 5 148551955 to 148553147 1192 CpG island CpG island 17076
Tssr54571 5 148552102 to 148552123 21 - TSS region transcription start site region 54571
Tssr54572 5 148552210 to 148552221 11 - TSS region transcription start site region 54572
Tssr54573 5 148552251 to 148552273 22 - TSS region transcription start site region 54573
Tssr49862 5 148552377 to 148552393 16 + TSS region transcription start site region 49862
Tssr54574 5 148552411 to 148552428 17 - TSS region transcription start site region 54574
Tssr54575 5 148552435 to 148552517 82 - TSS region transcription start site region 54575
Tssr54576 5 148552617 to 148552688 71 - TSS region transcription start site region 54576
Tssr54577 5 148552783 to 148552843 60 - TSS region transcription start site region 54577
1700013A02Rik 5 148553217 to 148553861 644 - unclassified gene RIKEN cDNA 1700013A02 gene
Tssr54578 5 148553856 to 148553881 25 - TSS region transcription start site region 54578
Tssr54579 5 148553993 to 148554025 32 - TSS region transcription start site region 54579
Gm35735 5 148572200 to 148579054 6854 + lncRNA gene predicted gene, 35735
Gm35994 5 148581119 to 148590791 9672 - lncRNA gene predicted gene, 35994
Gm35929 5 148584826 to 148589562 4736 - lncRNA gene predicted gene, 35929
Tssr54580 5 148589869 to 148589877 8 - TSS region transcription start site region 54580
Tssr54581 5 148590750 to 148590771 21 - TSS region transcription start site region 54581
Gm46929 5 148591229 to 148593977 2748 + lncRNA gene predicted gene, 46929
Gm29815 5 148613467 to 148613644 177 - pseudogene predicted gene, 29815
Gm36140 5 148634383 to 148640865 6482 + lncRNA gene predicted gene, 36140
Tssr54582 5 148652606 to 148652608 2 - TSS region transcription start site region 54582
Tssr54583 5 148652642 to 148652690 48 - TSS region transcription start site region 54583
Tssr54584 5 148652720 to 148652769 49 - TSS region transcription start site region 54584
Tssr49863 5 148653074 to 148653094 20 + TSS region transcription start site region 49863
Tssr54585 5 148678445 to 148678449 4 - TSS region transcription start site region 54585
Tssr49864 5 148678906 to 148678925 19 + TSS region transcription start site region 49864
Gm36186 5 148711466 to 148718397 6931 + lincRNA gene predicted gene, 36186