Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:147650109-149010121

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183 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Flt1 5 147562196 to 147726005 163809 - protein coding gene FMS-like tyrosine kinase 1
Gm35383 5 147658787 to 147668887 10100 + lncRNA gene predicted gene, 35383
Tssr49838 5 147681909 to 147681918 9 + TSS region transcription start site region 49838
Tssr54534 5 147688036 to 147688044 8 - TSS region transcription start site region 54534
D5Dcr8 5 147694583 to 147694680 97 DNA segment DNA segment, Chr 5, Derry C. Roopenian 8
Tssr54535 5 147722637 to 147722640 3 - TSS region transcription start site region 54535
Cpgi17061 5 147724951 to 147726707 1756 CpG island CpG island 17061
Tssr54536 5 147726002 to 147726023 21 - TSS region transcription start site region 54536
Tssr54537 5 147726326 to 147726357 31 - TSS region transcription start site region 54537
Cpgi17062 5 147734428 to 147734633 205 CpG island CpG island 17062
Gm35541 5 147742195 to 147753209 11014 - lncRNA gene predicted gene, 35541
Gm43156 5 147745516 to 147749176 3660 + lincRNA gene predicted gene 43156
Cpgi17063 5 147751665 to 147751981 316 CpG island CpG island 17063
Cpgi17064 5 147752890 to 147753298 408 CpG island CpG island 17064
Gm35592 5 147761034 to 147765051 4017 - lncRNA gene predicted gene, 35592
Gm43155 5 147822245 to 147822738 493 + pseudogene predicted gene 43155
Cpgi17065 5 147860252 to 147861246 994 CpG island CpG island 17065
Tssr49839 5 147860451 to 147860469 18 + TSS region transcription start site region 49839
Tssr1754 5 147860471 to 147860481 10 + TSS region transcription start site region 1754
Tssr1755 5 147860495 to 147860511 16 - TSS region transcription start site region 1755
Tssr49840 5 147860602 to 147860613 11 + TSS region transcription start site region 49840
Tssr49841 5 147860615 to 147860670 55 + TSS region transcription start site region 49841
Pomp 5 147860628 to 147875778 15150 + protein coding gene proteasome maturation protein
Tssr49842 5 147860685 to 147860694 9 + TSS region transcription start site region 49842
Gm35648 5 147868074 to 147868548 474 - pseudogene predicted gene, 35648
Tssr49843 5 147869458 to 147869478 20 + TSS region transcription start site region 49843
Tssr49844 5 147873246 to 147873257 11 + TSS region transcription start site region 49844
Tssr49845 5 147873263 to 147873287 24 + TSS region transcription start site region 49845
Tssr54538 5 147875548 to 147875563 15 - TSS region transcription start site region 54538
Tssr54539 5 147875606 to 147875651 45 - TSS region transcription start site region 54539
Slc46a3 5 147878437 to 147894815 16378 - protein coding gene solute carrier family 46, member 3
Cpgi17066 5 147894435 to 147895153 718 CpG island CpG island 17066
Tssr54540 5 147894777 to 147894786 9 - TSS region transcription start site region 54540
Tssr54541 5 147894787 to 147894798 11 - TSS region transcription start site region 54541
Tssr54542 5 147894804 to 147894830 26 - TSS region transcription start site region 54542
Tssr54543 5 147894831 to 147894838 7 - TSS region transcription start site region 54543
Tssr54544 5 147894841 to 147894849 8 - TSS region transcription start site region 54544
Tssr49846 5 147894952 to 147894990 38 + TSS region transcription start site region 49846
Tssr54545 5 147902158 to 147902168 10 - TSS region transcription start site region 54545
Gm46943 5 147918053 to 147918866 813 + lncRNA gene predicted gene, 46943
Gm15721 5 147949882 to 147957166 7284 - lincRNA gene predicted gene 15721
Cpgi17067 5 147956872 to 147958102 1230 CpG island CpG island 17067
Tssr49847 5 147957310 to 147957357 47 + TSS region transcription start site region 49847
Mtus2 5 147957320 to 148316065 358745 + protein coding gene microtubule associated tumor suppressor candidate 2
Tssr54546 5 147957729 to 147957737 8 - TSS region transcription start site region 54546
Tssr49848 5 147959358 to 147959369 11 + TSS region transcription start site region 49848
D5Mit1001 5 147982635 to 147982783 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1001
Tssr54547 5 148012313 to 148012332 19 - TSS region transcription start site region 54547
Cpgi17068 5 148027075 to 148027345 270 CpG island CpG island 17068
Cpgi17069 5 148077518 to 148077786 268 CpG island CpG island 17069
Tssr49849 5 148138110 to 148138111 1 + TSS region transcription start site region 49849
Gm46928 5 148150012 to 148160182 10170 + lncRNA gene predicted gene, 46928
Gm10167 5 148182899 to 148184377 1478 - pseudogene predicted pseudogene 10167
Tssr54548 5 148184363 to 148184387 24 - TSS region transcription start site region 54548
Gm43553 5 148206228 to 148206912 684 + unclassified gene predicted gene 43553
Cpgi17070 5 148224015 to 148224364 349 CpG island CpG island 17070
Tssr49850 5 148264901 to 148264918 17 + TSS region transcription start site region 49850
Tssr49851 5 148264929 to 148264944 15 + TSS region transcription start site region 49851
Cpgi17071 5 148264955 to 148265189 234 CpG island CpG island 17071
Tssr49852 5 148265202 to 148265263 61 + TSS region transcription start site region 49852
Tssr49853 5 148265265 to 148265305 40 + TSS region transcription start site region 49853
Tssr49854 5 148265307 to 148265318 11 + TSS region transcription start site region 49854
Cpgi17072 5 148288751 to 148289128 377 CpG island CpG island 17072
Tssr49855 5 148303176 to 148303236 60 + TSS region transcription start site region 49855
Cpgi17073 5 148303437 to 148303627 190 CpG island CpG island 17073
Slc7a1 5 148327410 to 148399904 72494 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
Tssr54549 5 148329920 to 148329933 13 - TSS region transcription start site region 54549
Tssr54550 5 148329938 to 148329981 43 - TSS region transcription start site region 54550
Tssr54551 5 148329996 to 148330019 23 - TSS region transcription start site region 54551
Tssr54552 5 148330064 to 148330078 14 - TSS region transcription start site region 54552
Tssr54553 5 148330109 to 148330121 12 - TSS region transcription start site region 54553
Tssr54554 5 148342108 to 148342156 48 - TSS region transcription start site region 54554
Tssr54555 5 148371525 to 148371532 7 - TSS region transcription start site region 54555
Tssr54556 5 148379568 to 148379572 4 - TSS region transcription start site region 54556
Tssr54557 5 148392810 to 148392816 6 - TSS region transcription start site region 54557
Tssr49856 5 148398876 to 148398902 26 + TSS region transcription start site region 49856
Cpgi17074 5 148398936 to 148400117 1181 CpG island CpG island 17074
Tssr49857 5 148399633 to 148399639 6 + TSS region transcription start site region 49857
Tssr54558 5 148399764 to 148399782 18 - TSS region transcription start site region 54558
Tssr54559 5 148399797 to 148399850 53 - TSS region transcription start site region 54559
Tssr54560 5 148399851 to 148399862 11 - TSS region transcription start site region 54560
Tssr54561 5 148399863 to 148399872 9 - TSS region transcription start site region 54561
Tssr54562 5 148399873 to 148399889 16 - TSS region transcription start site region 54562
Tssr54563 5 148399901 to 148399912 11 - TSS region transcription start site region 54563
Tssr49858 5 148399992 to 148400009 17 + TSS region transcription start site region 49858
Tssr54564 5 148400013 to 148400038 25 - TSS region transcription start site region 54564
Tssr49859 5 148400016 to 148400029 13 + TSS region transcription start site region 49859
Tssr49860 5 148400146 to 148400149 3 + TSS region transcription start site region 49860
Gm19617 5 148456838 to 148457145 307 + pseudogene predicted gene, 19617
Tssr54565 5 148489376 to 148489384 8 - TSS region transcription start site region 54565
Tssr49861 5 148489571 to 148489584 13 + TSS region transcription start site region 49861
4930549L11Rik 5 148489940 to 148490442 502 unclassified gene RIKEN cDNA 4930549L11 gene
Ubl3 5 148504635 to 148552789 48154 - protein coding gene ubiquitin-like 3
Tssr54566 5 148505848 to 148505861 13 - TSS region transcription start site region 54566
Tssr54567 5 148509351 to 148509362 11 - TSS region transcription start site region 54567
Tssr54568 5 148509364 to 148509381 17 - TSS region transcription start site region 54568
Tssr54569 5 148535200 to 148535202 2 - TSS region transcription start site region 54569
Cpgi17075 5 148551365 to 148551625 260 CpG island CpG island 17075
Tssr54570 5 148551648 to 148551681 33 - TSS region transcription start site region 54570
Cpgi17076 5 148551955 to 148553147 1192 CpG island CpG island 17076
Tssr54571 5 148552102 to 148552123 21 - TSS region transcription start site region 54571
Tssr54572 5 148552210 to 148552221 11 - TSS region transcription start site region 54572
Tssr54573 5 148552251 to 148552273 22 - TSS region transcription start site region 54573
Tssr49862 5 148552377 to 148552393 16 + TSS region transcription start site region 49862
Tssr54574 5 148552411 to 148552428 17 - TSS region transcription start site region 54574
Tssr54575 5 148552435 to 148552517 82 - TSS region transcription start site region 54575
Tssr54576 5 148552617 to 148552688 71 - TSS region transcription start site region 54576
Tssr54577 5 148552783 to 148552843 60 - TSS region transcription start site region 54577
1700013A02Rik 5 148553217 to 148553861 644 - unclassified gene RIKEN cDNA 1700013A02 gene
Tssr54578 5 148553856 to 148553881 25 - TSS region transcription start site region 54578
Tssr54579 5 148553993 to 148554025 32 - TSS region transcription start site region 54579
Gm35735 5 148572200 to 148579054 6854 + lncRNA gene predicted gene, 35735
Gm35994 5 148581119 to 148590791 9672 - lncRNA gene predicted gene, 35994
Gm35929 5 148584826 to 148589562 4736 - lncRNA gene predicted gene, 35929
Tssr54580 5 148589869 to 148589877 8 - TSS region transcription start site region 54580
Tssr54581 5 148590750 to 148590771 21 - TSS region transcription start site region 54581
Gm46929 5 148591229 to 148593977 2748 + lncRNA gene predicted gene, 46929
Gm29815 5 148613467 to 148613644 177 - pseudogene predicted gene, 29815
Gm36140 5 148634383 to 148640865 6482 + lncRNA gene predicted gene, 36140
Tssr54582 5 148652606 to 148652608 2 - TSS region transcription start site region 54582
Tssr54583 5 148652642 to 148652690 48 - TSS region transcription start site region 54583
Tssr54584 5 148652720 to 148652769 49 - TSS region transcription start site region 54584
Tssr49863 5 148653074 to 148653094 20 + TSS region transcription start site region 49863
Tssr54585 5 148678445 to 148678449 4 - TSS region transcription start site region 54585
Tssr49864 5 148678906 to 148678925 19 + TSS region transcription start site region 49864
Gm36186 5 148711466 to 148718397 6931 + lincRNA gene predicted gene, 36186
2210417A02Rik 5 148741840 to 148743139 1299 + lincRNA gene RIKEN cDNA 2210417A02 gene
Tssr1756 5 148741849 to 148741890 41 + TSS region transcription start site region 1756
Tssr54586 5 148746809 to 148746821 12 - TSS region transcription start site region 54586
n-R5s179 5 148753323 to 148753440 117 - rRNA gene nuclear encoded rRNA 5S 179
Tssr49865 5 148777950 to 148777988 38 + TSS region transcription start site region 49865
4930505K14Rik 5 148777963 to 148783080 5117 + lincRNA gene RIKEN cDNA 4930505K14 gene
Gm36405 5 148794317 to 148809286 14969 - lncRNA gene predicted gene, 36405
Cpgi17077 5 148794371 to 148794729 358 CpG island CpG island 17077
Cpgi17078 5 148811761 to 148812204 443 CpG island CpG island 17078
Cpgi17079 5 148820496 to 148820777 281 CpG island CpG island 17079
Gm15407 5 148820767 to 148837798 17031 + lincRNA gene predicted gene 15407
Cpgi17080 5 148831745 to 148832220 475 CpG island CpG island 17080
Cpgi17081 5 148837715 to 148837873 158 CpG island CpG island 17081
Tssr49866 5 148866874 to 148866883 9 + TSS region transcription start site region 49866
Tssr54587 5 148867883 to 148867917 34 - TSS region transcription start site region 54587
Katnal1 5 148871584 to 148929160 57576 - protein coding gene katanin p60 subunit A-like 1
Cpgi17082 5 148885828 to 148886200 372 CpG island CpG island 17082
Gm42791 5 148893775 to 148995147 101372 - protein coding gene predicted gene 42791
Gm43600 5 148926688 to 148926910 222 + pseudogene predicted gene 43600
Cpgi17083 5 148928318 to 148929447 1129 CpG island CpG island 17083
Tssr54588 5 148928585 to 148928618 33 - TSS region transcription start site region 54588
Tssr54589 5 148928619 to 148928659 40 - TSS region transcription start site region 54589
Tssr54590 5 148928699 to 148928713 14 - TSS region transcription start site region 54590
Gm36446 5 148928812 to 148929622 810 + lncRNA gene predicted gene, 36446
Tssr54591 5 148928820 to 148928825 5 - TSS region transcription start site region 54591
Tssr54592 5 148928916 to 148928927 11 - TSS region transcription start site region 54592
Tssr54593 5 148928929 to 148928951 22 - TSS region transcription start site region 54593
Tssr54594 5 148928981 to 148929044 63 - TSS region transcription start site region 54594
Gm15410 5 148946592 to 148948866 2274 - antisense lncRNA gene predicted gene 15410
Gm15406 5 148948897 to 148996566 47669 - lincRNA gene predicted gene 15406
8430423G03Rik 5 148950250 to 148951658 1408 + lincRNA gene RIKEN cDNA 8430423G03 gene
1810059H22Rik 5 148953748 to 148970122 16374 - unclassified non-coding RNA gene RIKEN cDNA 1810059H22 gene
Tssr54595 5 148955757 to 148955762 5 - TSS region transcription start site region 54595
Cpgi17084 5 148959147 to 148959716 569 CpG island CpG island 17084
Tssr49867 5 148959263 to 148959268 5 + TSS region transcription start site region 49867
Gm15409 5 148959278 to 148961712 2434 + lincRNA gene predicted gene 15409
Tssr54596 5 148959280 to 148959309 29 - TSS region transcription start site region 54596
Tssr49868 5 148959319 to 148959340 21 + TSS region transcription start site region 49868
Tssr54597 5 148959454 to 148959489 35 - TSS region transcription start site region 54597
Tssr54598 5 148959559 to 148959574 15 - TSS region transcription start site region 54598
Tssr49869 5 148959791 to 148959810 19 + TSS region transcription start site region 49869
Tssr54599 5 148959975 to 148960001 26 - TSS region transcription start site region 54599
Tssr54600 5 148967971 to 148967976 5 - TSS region transcription start site region 54600
Tssr54601 5 148969839 to 148969859 20 - TSS region transcription start site region 54601
Tssr54602 5 148969870 to 148969913 43 - TSS region transcription start site region 54602
Tssr54603 5 148969917 to 148969939 22 - TSS region transcription start site region 54603
5930430L01Rik 5 148990056 to 148995215 5159 - lincRNA gene RIKEN cDNA 5930430L01 gene
Cpgi17085 5 148995036 to 148995399 363 CpG island CpG island 17085
Tssr54604 5 148995161 to 148995173 12 - TSS region transcription start site region 54604
Tssr54605 5 148995176 to 148995201 25 - TSS region transcription start site region 54605
Tssr54606 5 148995208 to 148995233 25 - TSS region transcription start site region 54606
Gm15411 5 148995651 to 149015813 20162 - unclassified non-coding RNA gene predicted gene 15411
Tssr54607 5 148996543 to 148996571 28 - TSS region transcription start site region 54607
Tssr54608 5 148996608 to 148996620 12 - TSS region transcription start site region 54608
Cpgi17086 5 149006861 to 149007018 157 CpG island CpG island 17086
Tssr49870 5 149006948 to 149006966 18 + TSS region transcription start site region 49870
Gm15408 5 149006962 to 149012776 5814 + lincRNA gene predicted gene 15408