Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:147397299-147877314

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Flt3 5 147330741 to 147400489 69748 - protein coding gene FMS-like tyrosine kinase 3
Gm26597 5 147399672 to 147401920 2248 + antisense lncRNA gene predicted gene, 26597
Cpgi17058 5 147399841 to 147400726 885 CpG island CpG island 17058
Tssr54518 5 147400279 to 147400288 9 - TSS region transcription start site region 54518
Tssr54519 5 147400300 to 147400332 32 - TSS region transcription start site region 54519
Tssr54520 5 147400352 to 147400377 25 - TSS region transcription start site region 54520
Tssr54521 5 147400388 to 147400389 1 - TSS region transcription start site region 54521
Tssr49813 5 147400417 to 147400426 9 + TSS region transcription start site region 49813
Tssr49814 5 147400448 to 147400473 25 + TSS region transcription start site region 49814
Cpgi17059 5 147408812 to 147409105 293 CpG island CpG island 17059
Gm6054 5 147408982 to 147409359 377 + pseudogene predicted gene 6054
Gm29793 5 147409920 to 147410379 459 + pseudogene predicted gene, 29793
Tssr49815 5 147418588 to 147418629 41 + TSS region transcription start site region 49815
D5Ertd605e 5 147418620 to 147423044 4424 + lincRNA gene DNA segment, Chr 5, ERATO Doi 605, expressed
Tssr49816 5 147418631 to 147418637 6 + TSS region transcription start site region 49816
Tssr49817 5 147418646 to 147418659 13 + TSS region transcription start site region 49817
Tssr54522 5 147426539 to 147426565 26 - TSS region transcription start site region 54522
Tssr54523 5 147426577 to 147426589 12 - TSS region transcription start site region 54523
Gm43461 5 147427738 to 147428733 995 + unclassified gene predicted gene 43461
Gm43460 5 147428830 to 147429886 1056 + unclassified gene predicted gene 43460
Cpgi17060 5 147429737 to 147431691 1954 CpG island CpG island 17060
Tssr54524 5 147429811 to 147429815 4 - TSS region transcription start site region 54524
Tssr49818 5 147429961 to 147429979 18 + TSS region transcription start site region 49818
Tssr54525 5 147430060 to 147430115 55 - TSS region transcription start site region 54525
Tssr49819 5 147430153 to 147430217 64 + TSS region transcription start site region 49819
Pan3 5 147430161 to 147548502 118341 + protein coding gene PAN3 poly(A) specific ribonuclease subunit
Tssr49820 5 147430222 to 147430244 22 + TSS region transcription start site region 49820
Tssr49821 5 147430290 to 147430302 12 + TSS region transcription start site region 49821
Tssr49822 5 147430377 to 147430401 24 + TSS region transcription start site region 49822
Tssr49823 5 147430407 to 147430545 138 + TSS region transcription start site region 49823
Tssr49824 5 147430730 to 147430743 13 + TSS region transcription start site region 49824
Tssr49825 5 147430838 to 147430863 25 + TSS region transcription start site region 49825
Tssr54526 5 147431318 to 147431363 45 - TSS region transcription start site region 54526
Tssr49826 5 147431592 to 147431598 6 + TSS region transcription start site region 49826
Tssr49827 5 147432013 to 147432017 4 + TSS region transcription start site region 49827
Tssr49828 5 147439332 to 147439340 8 + TSS region transcription start site region 49828
Gm42883 5 147439390 to 147439611 221 + pseudogene predicted gene 42883
Tssr49829 5 147468462 to 147468471 9 + TSS region transcription start site region 49829
Tssr49830 5 147488125 to 147488145 20 + TSS region transcription start site region 49830
Tssr49831 5 147500721 to 147500724 3 + TSS region transcription start site region 49831
Tssr49832 5 147506170 to 147506173 3 + TSS region transcription start site region 49832
Tssr49833 5 147513745 to 147513748 3 + TSS region transcription start site region 49833
Tssr49834 5 147519697 to 147519720 23 + TSS region transcription start site region 49834
Tssr49835 5 147546516 to 147546535 19 + TSS region transcription start site region 49835
Tssr49836 5 147546594 to 147546600 6 + TSS region transcription start site region 49836
Tssr49837 5 147548070 to 147548074 4 + TSS region transcription start site region 49837
Tssr54527 5 147557782 to 147557789 7 - TSS region transcription start site region 54527
Flt1 5 147562196 to 147726005 163809 - protein coding gene FMS-like tyrosine kinase 1
Tssr54528 5 147566744 to 147566757 13 - TSS region transcription start site region 54528
Tssr54529 5 147566770 to 147566777 7 - TSS region transcription start site region 54529
D5Mit181 5 147576282 to 147576428 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 181
Tssr54530 5 147592473 to 147592474 1 - TSS region transcription start site region 54530
Tssr54531 5 147637299 to 147637314 15 - TSS region transcription start site region 54531
Tssr54532 5 147637460 to 147637467 7 - TSS region transcription start site region 54532
Tssr54533 5 147637492 to 147637503 11 - TSS region transcription start site region 54533
Gm35383 5 147658787 to 147668887 10100 + lncRNA gene predicted gene, 35383
Tssr49838 5 147681909 to 147681918 9 + TSS region transcription start site region 49838
Tssr54534 5 147688036 to 147688044 8 - TSS region transcription start site region 54534
D5Dcr8 5 147694583 to 147694680 97 DNA segment DNA segment, Chr 5, Derry C. Roopenian 8
Tssr54535 5 147722637 to 147722640 3 - TSS region transcription start site region 54535
Cpgi17061 5 147724951 to 147726707 1756 CpG island CpG island 17061
Tssr54536 5 147726002 to 147726023 21 - TSS region transcription start site region 54536
Tssr54537 5 147726326 to 147726357 31 - TSS region transcription start site region 54537
Cpgi17062 5 147734428 to 147734633 205 CpG island CpG island 17062
Gm35541 5 147742195 to 147753209 11014 - lncRNA gene predicted gene, 35541
Gm43156 5 147745516 to 147749176 3660 + lincRNA gene predicted gene 43156
Cpgi17063 5 147751665 to 147751981 316 CpG island CpG island 17063
Cpgi17064 5 147752890 to 147753298 408 CpG island CpG island 17064
Gm35592 5 147761034 to 147765051 4017 - lncRNA gene predicted gene, 35592
Gm43155 5 147822245 to 147822738 493 + pseudogene predicted gene 43155
Cpgi17065 5 147860252 to 147861246 994 CpG island CpG island 17065
Tssr49839 5 147860451 to 147860469 18 + TSS region transcription start site region 49839
Tssr1754 5 147860471 to 147860481 10 + TSS region transcription start site region 1754
Tssr1755 5 147860495 to 147860511 16 - TSS region transcription start site region 1755
Tssr49840 5 147860602 to 147860613 11 + TSS region transcription start site region 49840
Tssr49841 5 147860615 to 147860670 55 + TSS region transcription start site region 49841
Pomp 5 147860628 to 147875778 15150 + protein coding gene proteasome maturation protein
Tssr49842 5 147860685 to 147860694 9 + TSS region transcription start site region 49842
Gm35648 5 147868074 to 147868548 474 - pseudogene predicted gene, 35648
Tssr49843 5 147869458 to 147869478 20 + TSS region transcription start site region 49843
Tssr49844 5 147873246 to 147873257 11 + TSS region transcription start site region 49844
Tssr49845 5 147873263 to 147873287 24 + TSS region transcription start site region 49845
Tssr54538 5 147875548 to 147875563 15 - TSS region transcription start site region 54538
Tssr54539 5 147875606 to 147875651 45 - TSS region transcription start site region 54539