Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:147260720-147301263

14 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Plut	5	147228598 to 147271521	42923	-	antisense lncRNA gene	PDX1 associated lncRNA, upregulator of transcription
Tssr49807	5	147270091 to 147270102	11	+	TSS region	transcription start site region 49807
Tssr49808	5	147270110 to 147270139	29	+	TSS region	transcription start site region 49808
Cpgi17048	5	147270130 to 147270670	540		CpG island	CpG island 17048
Pdx1	5	147270131 to 147275149	5018	+	protein coding gene	pancreatic and duodenal homeobox 1
Tssr49809	5	147270146 to 147270168	22	+	TSS region	transcription start site region 49809
Cpgi17049	5	147274478 to 147274949	471		CpG island	CpG island 17049
Gm27033	5	147280720 to 147281263	543	+	lincRNA gene	predicted gene, 27033
Mir7k	5	147283189 to 147283298	109	-	miRNA gene	microRNA 7k
Gm35112	5	147290184 to 147297978	7794	-	lncRNA gene	predicted gene, 35112
Cpgi17050	5	147293319 to 147293481	162		CpG island	CpG island 17050
Cpgi17051	5	147294093 to 147294578	485		CpG island	CpG island 17051
Cpgi17052	5	147299517 to 147300099	582		CpG island	CpG island 17052
Cdx2	5	147300900 to 147307249	6349	-	protein coding gene	caudal type homeobox 2