Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:147259952-148529990

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plut 5 147228598 to 147271521 42923 - antisense lncRNA gene PDX1 associated lncRNA, upregulator of transcription
Tssr49807 5 147270091 to 147270102 11 + TSS region transcription start site region 49807
Tssr49808 5 147270110 to 147270139 29 + TSS region transcription start site region 49808
Cpgi17048 5 147270130 to 147270670 540 CpG island CpG island 17048
Pdx1 5 147270131 to 147275149 5018 + protein coding gene pancreatic and duodenal homeobox 1
Tssr49809 5 147270146 to 147270168 22 + TSS region transcription start site region 49809
Cpgi17049 5 147274478 to 147274949 471 CpG island CpG island 17049
Gm27033 5 147280720 to 147281263 543 + lincRNA gene predicted gene, 27033
Mir7k 5 147283189 to 147283298 109 - miRNA gene microRNA 7k
Gm35112 5 147290184 to 147297978 7794 - lncRNA gene predicted gene, 35112
Cpgi17050 5 147293319 to 147293481 162 CpG island CpG island 17050
Cpgi17051 5 147294093 to 147294578 485 CpG island CpG island 17051
Cpgi17052 5 147299517 to 147300099 582 CpG island CpG island 17052
Cdx2 5 147300900 to 147307249 6349 - protein coding gene caudal type homeobox 2
Cpgi17053 5 147301770 to 147301982 212 CpG island CpG island 17053
Cpgi17054 5 147304288 to 147305583 1295 CpG island CpG island 17054
Tssr49810 5 147304944 to 147304946 2 + TSS region transcription start site region 49810
Tssr54505 5 147305449 to 147305459 10 - TSS region transcription start site region 54505
Cpgi17055 5 147305726 to 147307620 1894 CpG island CpG island 17055
Tssr54506 5 147307038 to 147307049 11 - TSS region transcription start site region 54506
Tssr54507 5 147307063 to 147307139 76 - TSS region transcription start site region 54507
Tssr54508 5 147307216 to 147307230 14 - TSS region transcription start site region 54508
Tssr54509 5 147307233 to 147307256 23 - TSS region transcription start site region 54509
Tssr54510 5 147307264 to 147307281 17 - TSS region transcription start site region 54510
Cpgi17056 5 147312907 to 147313270 363 CpG island CpG island 17056
Cpgi17057 5 147314939 to 147315713 774 CpG island CpG island 17057
Urad 5 147314984 to 147322440 7456 - protein coding gene ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase
Tssr54511 5 147322246 to 147322276 30 - TSS region transcription start site region 54511
Tssr54512 5 147322339 to 147322362 23 - TSS region transcription start site region 54512
Tssr54513 5 147322380 to 147322383 3 - TSS region transcription start site region 54513
Tssr54514 5 147322387 to 147322410 23 - TSS region transcription start site region 54514
Tssr54515 5 147322435 to 147322449 14 - TSS region transcription start site region 54515
Gm29778 5 147325869 to 147326334 465 - pseudogene predicted gene, 29778
Tssr54516 5 147326356 to 147326381 25 - TSS region transcription start site region 54516
Flt3 5 147330741 to 147400489 69748 - protein coding gene FMS-like tyrosine kinase 3
Tssr54517 5 147339046 to 147339080 34 - TSS region transcription start site region 54517
Tssr49811 5 147341268 to 147341273 5 + TSS region transcription start site region 49811
Tssr49812 5 147343139 to 147343175 36 + TSS region transcription start site region 49812
Gm26597 5 147399672 to 147401920 2248 + antisense lncRNA gene predicted gene, 26597
Cpgi17058 5 147399841 to 147400726 885 CpG island CpG island 17058
Tssr54518 5 147400279 to 147400288 9 - TSS region transcription start site region 54518
Tssr54519 5 147400300 to 147400332 32 - TSS region transcription start site region 54519
Tssr54520 5 147400352 to 147400377 25 - TSS region transcription start site region 54520
Tssr54521 5 147400388 to 147400389 1 - TSS region transcription start site region 54521
Tssr49813 5 147400417 to 147400426 9 + TSS region transcription start site region 49813
Tssr49814 5 147400448 to 147400473 25 + TSS region transcription start site region 49814
Cpgi17059 5 147408812 to 147409105 293 CpG island CpG island 17059
Gm6054 5 147408982 to 147409359 377 + pseudogene predicted gene 6054
Gm29793 5 147409920 to 147410379 459 + pseudogene predicted gene, 29793
Tssr49815 5 147418588 to 147418629 41 + TSS region transcription start site region 49815
D5Ertd605e 5 147418620 to 147423044 4424 + lincRNA gene DNA segment, Chr 5, ERATO Doi 605, expressed
Tssr49816 5 147418631 to 147418637 6 + TSS region transcription start site region 49816
Tssr49817 5 147418646 to 147418659 13 + TSS region transcription start site region 49817
Tssr54522 5 147426539 to 147426565 26 - TSS region transcription start site region 54522
Tssr54523 5 147426577 to 147426589 12 - TSS region transcription start site region 54523
Gm43461 5 147427738 to 147428733 995 + unclassified gene predicted gene 43461
Gm43460 5 147428830 to 147429886 1056 + unclassified gene predicted gene 43460
Cpgi17060 5 147429737 to 147431691 1954 CpG island CpG island 17060
Tssr54524 5 147429811 to 147429815 4 - TSS region transcription start site region 54524
Tssr49818 5 147429961 to 147429979 18 + TSS region transcription start site region 49818
Tssr54525 5 147430060 to 147430115 55 - TSS region transcription start site region 54525
Tssr49819 5 147430153 to 147430217 64 + TSS region transcription start site region 49819
Pan3 5 147430161 to 147548502 118341 + protein coding gene PAN3 poly(A) specific ribonuclease subunit
Tssr49820 5 147430222 to 147430244 22 + TSS region transcription start site region 49820
Tssr49821 5 147430290 to 147430302 12 + TSS region transcription start site region 49821
Tssr49822 5 147430377 to 147430401 24 + TSS region transcription start site region 49822
Tssr49823 5 147430407 to 147430545 138 + TSS region transcription start site region 49823
Tssr49824 5 147430730 to 147430743 13 + TSS region transcription start site region 49824
Tssr49825 5 147430838 to 147430863 25 + TSS region transcription start site region 49825
Tssr54526 5 147431318 to 147431363 45 - TSS region transcription start site region 54526
Tssr49826 5 147431592 to 147431598 6 + TSS region transcription start site region 49826
Tssr49827 5 147432013 to 147432017 4 + TSS region transcription start site region 49827
Tssr49828 5 147439332 to 147439340 8 + TSS region transcription start site region 49828
Gm42883 5 147439390 to 147439611 221 + pseudogene predicted gene 42883
Tssr49829 5 147468462 to 147468471 9 + TSS region transcription start site region 49829
Tssr49830 5 147488125 to 147488145 20 + TSS region transcription start site region 49830
Tssr49831 5 147500721 to 147500724 3 + TSS region transcription start site region 49831
Tssr49832 5 147506170 to 147506173 3 + TSS region transcription start site region 49832
Tssr49833 5 147513745 to 147513748 3 + TSS region transcription start site region 49833
Tssr49834 5 147519697 to 147519720 23 + TSS region transcription start site region 49834
Tssr49835 5 147546516 to 147546535 19 + TSS region transcription start site region 49835
Tssr49836 5 147546594 to 147546600 6 + TSS region transcription start site region 49836
Tssr49837 5 147548070 to 147548074 4 + TSS region transcription start site region 49837
Tssr54527 5 147557782 to 147557789 7 - TSS region transcription start site region 54527
Flt1 5 147562196 to 147726005 163809 - protein coding gene FMS-like tyrosine kinase 1
Tssr54528 5 147566744 to 147566757 13 - TSS region transcription start site region 54528
Tssr54529 5 147566770 to 147566777 7 - TSS region transcription start site region 54529
D5Mit181 5 147576282 to 147576428 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 181
Tssr54530 5 147592473 to 147592474 1 - TSS region transcription start site region 54530
Tssr54531 5 147637299 to 147637314 15 - TSS region transcription start site region 54531
Tssr54532 5 147637460 to 147637467 7 - TSS region transcription start site region 54532
Tssr54533 5 147637492 to 147637503 11 - TSS region transcription start site region 54533
Gm35383 5 147658787 to 147668887 10100 + lncRNA gene predicted gene, 35383
Tssr49838 5 147681909 to 147681918 9 + TSS region transcription start site region 49838
Tssr54534 5 147688036 to 147688044 8 - TSS region transcription start site region 54534
D5Dcr8 5 147694583 to 147694680 97 DNA segment DNA segment, Chr 5, Derry C. Roopenian 8
Tssr54535 5 147722637 to 147722640 3 - TSS region transcription start site region 54535
Cpgi17061 5 147724951 to 147726707 1756 CpG island CpG island 17061
Tssr54536 5 147726002 to 147726023 21 - TSS region transcription start site region 54536
Tssr54537 5 147726326 to 147726357 31 - TSS region transcription start site region 54537
Cpgi17062 5 147734428 to 147734633 205 CpG island CpG island 17062
Gm35541 5 147742195 to 147753209 11014 - lncRNA gene predicted gene, 35541
Gm43156 5 147745516 to 147749176 3660 + lincRNA gene predicted gene 43156
Cpgi17063 5 147751665 to 147751981 316 CpG island CpG island 17063
Cpgi17064 5 147752890 to 147753298 408 CpG island CpG island 17064
Gm35592 5 147761034 to 147765051 4017 - lncRNA gene predicted gene, 35592
Gm43155 5 147822245 to 147822738 493 + pseudogene predicted gene 43155
Cpgi17065 5 147860252 to 147861246 994 CpG island CpG island 17065
Tssr49839 5 147860451 to 147860469 18 + TSS region transcription start site region 49839
Tssr1754 5 147860471 to 147860481 10 + TSS region transcription start site region 1754
Tssr1755 5 147860495 to 147860511 16 - TSS region transcription start site region 1755
Tssr49840 5 147860602 to 147860613 11 + TSS region transcription start site region 49840
Tssr49841 5 147860615 to 147860670 55 + TSS region transcription start site region 49841
Pomp 5 147860628 to 147875778 15150 + protein coding gene proteasome maturation protein
Tssr49842 5 147860685 to 147860694 9 + TSS region transcription start site region 49842
Gm35648 5 147868074 to 147868548 474 - pseudogene predicted gene, 35648
Tssr49843 5 147869458 to 147869478 20 + TSS region transcription start site region 49843
Tssr49844 5 147873246 to 147873257 11 + TSS region transcription start site region 49844
Tssr49845 5 147873263 to 147873287 24 + TSS region transcription start site region 49845
Tssr54538 5 147875548 to 147875563 15 - TSS region transcription start site region 54538
Tssr54539 5 147875606 to 147875651 45 - TSS region transcription start site region 54539
Slc46a3 5 147878437 to 147894815 16378 - protein coding gene solute carrier family 46, member 3
Cpgi17066 5 147894435 to 147895153 718 CpG island CpG island 17066
Tssr54540 5 147894777 to 147894786 9 - TSS region transcription start site region 54540
Tssr54541 5 147894787 to 147894798 11 - TSS region transcription start site region 54541
Tssr54542 5 147894804 to 147894830 26 - TSS region transcription start site region 54542
Tssr54543 5 147894831 to 147894838 7 - TSS region transcription start site region 54543
Tssr54544 5 147894841 to 147894849 8 - TSS region transcription start site region 54544
Tssr49846 5 147894952 to 147894990 38 + TSS region transcription start site region 49846
Tssr54545 5 147902158 to 147902168 10 - TSS region transcription start site region 54545
Gm46943 5 147918053 to 147918866 813 + lncRNA gene predicted gene, 46943
Gm15721 5 147949882 to 147957166 7284 - lincRNA gene predicted gene 15721
Cpgi17067 5 147956872 to 147958102 1230 CpG island CpG island 17067
Tssr49847 5 147957310 to 147957357 47 + TSS region transcription start site region 49847
Mtus2 5 147957320 to 148316065 358745 + protein coding gene microtubule associated tumor suppressor candidate 2
Tssr54546 5 147957729 to 147957737 8 - TSS region transcription start site region 54546
Tssr49848 5 147959358 to 147959369 11 + TSS region transcription start site region 49848
D5Mit1001 5 147982635 to 147982783 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1001
Tssr54547 5 148012313 to 148012332 19 - TSS region transcription start site region 54547
Cpgi17068 5 148027075 to 148027345 270 CpG island CpG island 17068
Cpgi17069 5 148077518 to 148077786 268 CpG island CpG island 17069
Tssr49849 5 148138110 to 148138111 1 + TSS region transcription start site region 49849
Gm46928 5 148150012 to 148160182 10170 + lncRNA gene predicted gene, 46928
Gm10167 5 148182899 to 148184377 1478 - pseudogene predicted pseudogene 10167
Tssr54548 5 148184363 to 148184387 24 - TSS region transcription start site region 54548
Gm43553 5 148206228 to 148206912 684 + unclassified gene predicted gene 43553
Cpgi17070 5 148224015 to 148224364 349 CpG island CpG island 17070
Tssr49850 5 148264901 to 148264918 17 + TSS region transcription start site region 49850
Tssr49851 5 148264929 to 148264944 15 + TSS region transcription start site region 49851
Cpgi17071 5 148264955 to 148265189 234 CpG island CpG island 17071
Tssr49852 5 148265202 to 148265263 61 + TSS region transcription start site region 49852
Tssr49853 5 148265265 to 148265305 40 + TSS region transcription start site region 49853
Tssr49854 5 148265307 to 148265318 11 + TSS region transcription start site region 49854
Cpgi17072 5 148288751 to 148289128 377 CpG island CpG island 17072
Tssr49855 5 148303176 to 148303236 60 + TSS region transcription start site region 49855
Cpgi17073 5 148303437 to 148303627 190 CpG island CpG island 17073
Slc7a1 5 148327410 to 148399904 72494 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
Tssr54549 5 148329920 to 148329933 13 - TSS region transcription start site region 54549
Tssr54550 5 148329938 to 148329981 43 - TSS region transcription start site region 54550
Tssr54551 5 148329996 to 148330019 23 - TSS region transcription start site region 54551
Tssr54552 5 148330064 to 148330078 14 - TSS region transcription start site region 54552
Tssr54553 5 148330109 to 148330121 12 - TSS region transcription start site region 54553
Tssr54554 5 148342108 to 148342156 48 - TSS region transcription start site region 54554
Tssr54555 5 148371525 to 148371532 7 - TSS region transcription start site region 54555
Tssr54556 5 148379568 to 148379572 4 - TSS region transcription start site region 54556
Tssr54557 5 148392810 to 148392816 6 - TSS region transcription start site region 54557
Tssr49856 5 148398876 to 148398902 26 + TSS region transcription start site region 49856
Cpgi17074 5 148398936 to 148400117 1181 CpG island CpG island 17074
Tssr49857 5 148399633 to 148399639 6 + TSS region transcription start site region 49857
Tssr54558 5 148399764 to 148399782 18 - TSS region transcription start site region 54558
Tssr54559 5 148399797 to 148399850 53 - TSS region transcription start site region 54559
Tssr54560 5 148399851 to 148399862 11 - TSS region transcription start site region 54560
Tssr54561 5 148399863 to 148399872 9 - TSS region transcription start site region 54561
Tssr54562 5 148399873 to 148399889 16 - TSS region transcription start site region 54562
Tssr54563 5 148399901 to 148399912 11 - TSS region transcription start site region 54563
Tssr49858 5 148399992 to 148400009 17 + TSS region transcription start site region 49858
Tssr54564 5 148400013 to 148400038 25 - TSS region transcription start site region 54564
Tssr49859 5 148400016 to 148400029 13 + TSS region transcription start site region 49859
Tssr49860 5 148400146 to 148400149 3 + TSS region transcription start site region 49860
Gm19617 5 148456838 to 148457145 307 + pseudogene predicted gene, 19617
Tssr54565 5 148489376 to 148489384 8 - TSS region transcription start site region 54565
Tssr49861 5 148489571 to 148489584 13 + TSS region transcription start site region 49861
4930549L11Rik 5 148489940 to 148490442 502 unclassified gene RIKEN cDNA 4930549L11 gene
Ubl3 5 148504635 to 148552789 48154 - protein coding gene ubiquitin-like 3
Tssr54566 5 148505848 to 148505861 13 - TSS region transcription start site region 54566
Tssr54567 5 148509351 to 148509362 11 - TSS region transcription start site region 54567
Tssr54568 5 148509364 to 148509381 17 - TSS region transcription start site region 54568