Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:147218598-147281521

15 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm38751	5	147217824 to 147221865	4041	-	lncRNA gene	predicted gene, 38751
Tssr54502	5	147221803 to 147221815	12	-	TSS region	transcription start site region 54502
Tssr54503	5	147221836 to 147221854	18	-	TSS region	transcription start site region 54503
Cpgi17046	5	147227345 to 147227783	438		CpG island	CpG island 17046
Plut	5	147228598 to 147271521	42923	-	antisense lncRNA gene	PDX1 associated lncRNA, upregulator of transcription
Tssr54504	5	147235544 to 147235557	13	-	TSS region	transcription start site region 54504
Gm38750	5	147236878 to 147238580	1702	-	lncRNA gene	predicted gene, 38750
Cpgi17047	5	147253618 to 147253805	187		CpG island	CpG island 17047
Tssr49807	5	147270091 to 147270102	11	+	TSS region	transcription start site region 49807
Tssr49808	5	147270110 to 147270139	29	+	TSS region	transcription start site region 49808
Cpgi17048	5	147270130 to 147270670	540		CpG island	CpG island 17048
Pdx1	5	147270131 to 147275149	5018	+	protein coding gene	pancreatic and duodenal homeobox 1
Tssr49809	5	147270146 to 147270168	22	+	TSS region	transcription start site region 49809
Cpgi17049	5	147274478 to 147274949	471		CpG island	CpG island 17049
Gm27033	5	147280720 to 147281263	543	+	lincRNA gene	predicted gene, 27033