Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:147187216-147427230

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17041 5 147186775 to 147187893 1118 CpG island CpG island 17041
Cpgi17042 5 147188191 to 147190515 2324 CpG island CpG island 17042
Tssr49806 5 147188678 to 147188684 6 + TSS region transcription start site region 49806
Gsx1 5 147188696 to 147190947 2251 + protein coding gene GS homeobox 1
Cpgi17043 5 147191254 to 147192005 751 CpG island CpG island 17043
Cpgi17044 5 147192448 to 147192720 272 CpG island CpG island 17044
Gm24556 5 147200124 to 147200253 129 - snoRNA gene predicted gene, 24556
Cpgi17045 5 147207746 to 147208321 575 CpG island CpG island 17045
Gm38751 5 147217824 to 147221865 4041 - lncRNA gene predicted gene, 38751
Tssr54502 5 147221803 to 147221815 12 - TSS region transcription start site region 54502
Tssr54503 5 147221836 to 147221854 18 - TSS region transcription start site region 54503
Cpgi17046 5 147227345 to 147227783 438 CpG island CpG island 17046
Plut 5 147228598 to 147271521 42923 - antisense lncRNA gene PDX1 associated lncRNA, upregulator of transcription
Tssr54504 5 147235544 to 147235557 13 - TSS region transcription start site region 54504
Gm38750 5 147236878 to 147238580 1702 - lncRNA gene predicted gene, 38750
Cpgi17047 5 147253618 to 147253805 187 CpG island CpG island 17047
Tssr49807 5 147270091 to 147270102 11 + TSS region transcription start site region 49807
Tssr49808 5 147270110 to 147270139 29 + TSS region transcription start site region 49808
Cpgi17048 5 147270130 to 147270670 540 CpG island CpG island 17048
Pdx1 5 147270131 to 147275149 5018 + protein coding gene pancreatic and duodenal homeobox 1
Tssr49809 5 147270146 to 147270168 22 + TSS region transcription start site region 49809
Cpgi17049 5 147274478 to 147274949 471 CpG island CpG island 17049
Gm27033 5 147280720 to 147281263 543 + lincRNA gene predicted gene, 27033
Mir7k 5 147283189 to 147283298 109 - miRNA gene microRNA 7k
Gm35112 5 147290184 to 147297978 7794 - lncRNA gene predicted gene, 35112
Cpgi17050 5 147293319 to 147293481 162 CpG island CpG island 17050
Cpgi17051 5 147294093 to 147294578 485 CpG island CpG island 17051
Cpgi17052 5 147299517 to 147300099 582 CpG island CpG island 17052
Cdx2 5 147300900 to 147307249 6349 - protein coding gene caudal type homeobox 2
Cpgi17053 5 147301770 to 147301982 212 CpG island CpG island 17053
Cpgi17054 5 147304288 to 147305583 1295 CpG island CpG island 17054
Tssr49810 5 147304944 to 147304946 2 + TSS region transcription start site region 49810
Tssr54505 5 147305449 to 147305459 10 - TSS region transcription start site region 54505
Cpgi17055 5 147305726 to 147307620 1894 CpG island CpG island 17055
Tssr54506 5 147307038 to 147307049 11 - TSS region transcription start site region 54506
Tssr54507 5 147307063 to 147307139 76 - TSS region transcription start site region 54507
Tssr54508 5 147307216 to 147307230 14 - TSS region transcription start site region 54508
Tssr54509 5 147307233 to 147307256 23 - TSS region transcription start site region 54509
Tssr54510 5 147307264 to 147307281 17 - TSS region transcription start site region 54510
Cpgi17056 5 147312907 to 147313270 363 CpG island CpG island 17056
Cpgi17057 5 147314939 to 147315713 774 CpG island CpG island 17057
Urad 5 147314984 to 147322440 7456 - protein coding gene ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase
Tssr54511 5 147322246 to 147322276 30 - TSS region transcription start site region 54511
Tssr54512 5 147322339 to 147322362 23 - TSS region transcription start site region 54512
Tssr54513 5 147322380 to 147322383 3 - TSS region transcription start site region 54513
Tssr54514 5 147322387 to 147322410 23 - TSS region transcription start site region 54514
Tssr54515 5 147322435 to 147322449 14 - TSS region transcription start site region 54515
Gm29778 5 147325869 to 147326334 465 - pseudogene predicted gene, 29778
Tssr54516 5 147326356 to 147326381 25 - TSS region transcription start site region 54516
Flt3 5 147330741 to 147400489 69748 - protein coding gene FMS-like tyrosine kinase 3
Tssr54517 5 147339046 to 147339080 34 - TSS region transcription start site region 54517
Tssr49811 5 147341268 to 147341273 5 + TSS region transcription start site region 49811
Tssr49812 5 147343139 to 147343175 36 + TSS region transcription start site region 49812
Gm26597 5 147399672 to 147401920 2248 + antisense lncRNA gene predicted gene, 26597
Cpgi17058 5 147399841 to 147400726 885 CpG island CpG island 17058
Tssr54518 5 147400279 to 147400288 9 - TSS region transcription start site region 54518
Tssr54519 5 147400300 to 147400332 32 - TSS region transcription start site region 54519
Tssr54520 5 147400352 to 147400377 25 - TSS region transcription start site region 54520
Tssr54521 5 147400388 to 147400389 1 - TSS region transcription start site region 54521
Tssr49813 5 147400417 to 147400426 9 + TSS region transcription start site region 49813
Tssr49814 5 147400448 to 147400473 25 + TSS region transcription start site region 49814
Cpgi17059 5 147408812 to 147409105 293 CpG island CpG island 17059
Gm6054 5 147408982 to 147409359 377 + pseudogene predicted gene 6054
Gm29793 5 147409920 to 147410379 459 + pseudogene predicted gene, 29793
Tssr49815 5 147418588 to 147418629 41 + TSS region transcription start site region 49815
D5Ertd605e 5 147418620 to 147423044 4424 + lincRNA gene DNA segment, Chr 5, ERATO Doi 605, expressed
Tssr49816 5 147418631 to 147418637 6 + TSS region transcription start site region 49816
Tssr49817 5 147418646 to 147418659 13 + TSS region transcription start site region 49817
Tssr54522 5 147426539 to 147426565 26 - TSS region transcription start site region 54522
Tssr54523 5 147426577 to 147426589 12 - TSS region transcription start site region 54523