Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:14708797-17058805

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pclo 5 14514918 to 14863459 348541 + protein coding gene piccolo (presynaptic cytomatrix protein)
Gm26954 5 14696985 to 14723664 26679 - antisense lncRNA gene predicted gene, 26954
Tssr50124 5 14723666 to 14723679 13 - TSS region transcription start site region 50124
Tssr50125 5 14723681 to 14723698 17 - TSS region transcription start site region 50125
Tssr50126 5 14723699 to 14723704 5 - TSS region transcription start site region 50126
Tssr50127 5 14723708 to 14723721 13 - TSS region transcription start site region 50127
Tssr50128 5 14723731 to 14723740 9 - TSS region transcription start site region 50128
Gm43662 5 14778932 to 14781202 2270 + unclassified gene predicted gene 43662
Gm18668 5 14783234 to 14784377 1143 + pseudogene predicted gene, 18668
Gm43665 5 14804901 to 14806559 1658 + unclassified gene predicted gene 43665
Gm9758 5 14910122 to 14914899 4777 - protein coding gene predicted gene 9758
D5Mit103a 5 14931998 to 14932222 224 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 103a
Speer4e 5 14933631 to 14938475 4844 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4e
Speer8-ps1 5 14945294 to 14978541 33247 + pseudogene spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1
Gm10354 5 14974113 to 14978935 4822 - protein coding gene predicted gene 10354
D5Mit103b 5 15027288 to 15027520 232 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 103b
Gm17019 5 15028950 to 15032998 4048 - protein coding gene predicted gene 17019
Gm43391 5 15464171 to 15478876 14705 + antisense lncRNA gene predicted gene 43391
Gm21149 5 15471703 to 15476523 4820 - protein coding gene predicted gene, 21149
9930105H17Rik 5 15498801 to 15501506 2705 unclassified non-coding RNA gene RIKEN cDNA 9930105H17 gene
Tssr1424 5 15507059 to 15507070 11 - TSS region transcription start site region 1424
Gm21847 5 15511563 to 15525867 14304 + antisense lncRNA gene predicted gene, 21847
Gm21190 5 15524456 to 15529222 4766 - protein coding gene predicted gene, 21190
Tssr1425 5 15577288 to 15577317 29 + TSS region transcription start site region 1425
Gm21083 5 15577333 to 15582078 4745 + protein coding gene predicted gene, 21083
Gm30613 5 15577483 to 15605125 27642 - antisense lncRNA gene predicted gene, 30613
Gm30417 5 15609971 to 15634110 24139 - lncRNA gene predicted gene, 30417
Tssr45208 5 15619087 to 15619110 23 + TSS region transcription start site region 45208
Speer4d 5 15619099 to 15623864 4765 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4D
4930572O03Rik 5 15652288 to 15657059 4771 - protein coding gene RIKEN cDNA 4930572O03 gene
Speer4cos 5 15680710 to 15714596 33886 + antisense lncRNA gene spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript
Speer4c 5 15709501 to 15714271 4770 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4C
Gm42452 5 15798001 to 15799033 1032 + pseudogene predicted gene 42452
Gm42454 5 15805564 to 15806744 1180 + unclassified gene predicted gene 42454
4930519H02Rik 5 15863928 to 15883766 19838 - lincRNA gene RIKEN cDNA 4930519H02 gene
Gm42453 5 15870247 to 15870655 408 + pseudogene predicted gene 42453
Tssr50129 5 15883797 to 15883805 8 - TSS region transcription start site region 50129
Tssr50130 5 15883806 to 15883810 4 - TSS region transcription start site region 50130
Tssr50131 5 15883814 to 15883833 19 - TSS region transcription start site region 50131
Gm42451 5 15900244 to 15900487 243 - pseudogene predicted gene 42451
Gm3510 5 15923755 to 15933406 9651 - lincRNA gene predicted gene 3510
Cpgi15553 5 15933981 to 15935641 1660 CpG island CpG island 15553
Tssr45209 5 15934373 to 15934397 24 + TSS region transcription start site region 45209
Tssr45210 5 15934556 to 15934624 68 + TSS region transcription start site region 45210
Tssr1426 5 15934674 to 15934679 5 + TSS region transcription start site region 1426
Tssr45211 5 15934685 to 15934696 11 + TSS region transcription start site region 45211
Cacna2d1 5 15934691 to 16374511 439820 + protein coding gene calcium channel, voltage-dependent, alpha2/delta subunit 1
Tssr45212 5 15934706 to 15934719 13 + TSS region transcription start site region 45212
Tssr45213 5 15934731 to 15934746 15 + TSS region transcription start site region 45213
Tssr45214 5 15934762 to 15934787 25 + TSS region transcription start site region 45214
Tssr1427 5 15934891 to 15934900 9 + TSS region transcription start site region 1427
Tssr45215 5 15934913 to 15934926 13 + TSS region transcription start site region 45215
Tssr45216 5 15934953 to 15934962 9 + TSS region transcription start site region 45216
6720420G18Rik 5 15969941 to 15971044 1103 unclassified gene RIKEN cDNA 6720420G18 gene
Tssr45217 5 15991096 to 15991097 1 + TSS region transcription start site region 45217
9630055L06Rik 5 15993956 to 15999061 5105 lncRNA gene RIKEN cDNA 9630055L06 gene
Gm43000 5 15993957 to 15997839 3882 - antisense lncRNA gene predicted gene 43000
Tssr45218 5 16008810 to 16008811 1 + TSS region transcription start site region 45218
D5Mit226 5 16010646 to 16010769 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 226
Gm43490 5 16107129 to 16109780 2651 + unclassified gene predicted gene 43490
Tssr1428 5 16181274 to 16181281 7 + TSS region transcription start site region 1428
Tssr45219 5 16293333 to 16293337 4 + TSS region transcription start site region 45219
Tssr45220 5 16296820 to 16296824 4 + TSS region transcription start site region 45220
Gm43491 5 16343398 to 16344181 783 - pseudogene predicted gene 43491
D5Mit194 5 16483327 to 16483443 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 194
Gm8984 5 16508165 to 16509183 1018 - pseudogene predicted gene 8984
Tssr45221 5 16553455 to 16553485 30 + TSS region transcription start site region 45221
Tssr45222 5 16553488 to 16553502 14 + TSS region transcription start site region 45222
Hgf 5 16553495 to 16619439 65944 + protein coding gene hepatocyte growth factor
Tssr1429 5 16553505 to 16553517 12 + TSS region transcription start site region 1429
Tssr45223 5 16553540 to 16553588 48 + TSS region transcription start site region 45223
Tssr45224 5 16553595 to 16553615 20 + TSS region transcription start site region 45224
Tssr45225 5 16553749 to 16553761 12 + TSS region transcription start site region 45225
Tssr45226 5 16553779 to 16553795 16 + TSS region transcription start site region 45226
Tssr45227 5 16553799 to 16553821 22 + TSS region transcription start site region 45227
Tssr45228 5 16553831 to 16553857 26 + TSS region transcription start site region 45228
Tssr45229 5 16553859 to 16553886 27 + TSS region transcription start site region 45229
Tssr45230 5 16553900 to 16553909 9 + TSS region transcription start site region 45230
Gm31113 5 16554026 to 16569479 15453 - lncRNA gene predicted gene, 31113
Gm43489 5 16572951 to 16573943 992 + unclassified gene predicted gene 43489
Gm42975 5 16605722 to 16607212 1490 + unclassified gene predicted gene 42975
D5Mit293 5 16639444 to 16639565 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 293
Gm8991 5 16729996 to 16731070 1074 - pseudogene predicted pseudogene 8991
Gm28710 5 16791828 to 16829017 37189 + lincRNA gene predicted gene 28710
Tssr45231 5 16870134 to 16870143 9 + TSS region transcription start site region 45231
Tssr45232 5 16870167 to 16870178 11 + TSS region transcription start site region 45232
Tssr45233 5 16870214 to 16870215 1 + TSS region transcription start site region 45233
Tssr45234 5 16870224 to 16870238 14 + TSS region transcription start site region 45234
Tssr45235 5 16870243 to 16870254 11 + TSS region transcription start site region 45235
Tssr45236 5 16870255 to 16870263 8 + TSS region transcription start site region 45236
Gm42855 5 16981036 to 16981288 252 + pseudogene predicted gene 42855
D5Mit225 5 17005788 to 17005911 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 225