Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:146770544-147700557

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp12 5 146734809 to 146794956 60147 - protein coding gene ubiquitin specific peptidase 12
Tssr49785 5 146781928 to 146781950 22 + TSS region transcription start site region 49785
Tssr54484 5 146790488 to 146790499 11 - TSS region transcription start site region 54484
Cpgi17031 5 146793845 to 146795339 1494 CpG island CpG island 17031
Tssr54485 5 146794771 to 146794782 11 - TSS region transcription start site region 54485
Tssr54486 5 146794788 to 146794834 46 - TSS region transcription start site region 54486
Tssr54487 5 146795002 to 146795009 7 - TSS region transcription start site region 54487
Tssr49786 5 146795911 to 146795935 24 + TSS region transcription start site region 49786
1700041I07Rik 5 146795918 to 146806433 10515 + lincRNA gene RIKEN cDNA 1700041I07 gene
Tssr49787 5 146795938 to 146795954 16 + TSS region transcription start site region 49787
Tssr54488 5 146821041 to 146821052 11 - TSS region transcription start site region 54488
Cpgi17032 5 146824627 to 146824877 250 CpG island CpG island 17032
Cpgi17033 5 146832692 to 146833626 934 CpG island CpG island 17033
Tssr54489 5 146832803 to 146832816 13 - TSS region transcription start site region 54489
Tssr54490 5 146832832 to 146832863 31 - TSS region transcription start site region 54490
Rpl21 5 146832890 to 146837032 4142 + protein coding gene ribosomal protein L21
Tssr49788 5 146832899 to 146832947 48 + TSS region transcription start site region 49788
Tssr49789 5 146832964 to 146832983 19 + TSS region transcription start site region 49789
Tssr49790 5 146832989 to 146832998 9 + TSS region transcription start site region 49790
Tssr49791 5 146833013 to 146833024 11 + TSS region transcription start site region 49791
Tssr49792 5 146833106 to 146833210 104 + TSS region transcription start site region 49792
Tssr49793 5 146833269 to 146833280 11 + TSS region transcription start site region 49793
Gm25091 5 146834834 to 146834904 70 + snoRNA gene predicted gene, 25091
Gm23202 5 146835144 to 146835272 128 + snoRNA gene predicted gene, 23202
Cpgi17034 5 146844668 to 146845753 1085 CpG island CpG island 17034
Rasl11a 5 146845071 to 146847726 2655 + protein coding gene RAS-like, family 11, member A
Tssr49794 5 146845114 to 146845123 9 + TSS region transcription start site region 49794
Tssr49795 5 146845130 to 146845150 20 + TSS region transcription start site region 49795
D5Mit223 5 146851021 to 146851125 104 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 223
Jcdq2 5 146851021 to 146851125 104 QTL joint cartilage degeneration QTL 2
Prnr1 5 146851125 to 89271017 -57580108 QTL prion resistance 1
Gm38748 5 146857856 to 146879911 22055 + lncRNA gene predicted gene, 38748
Tssr54491 5 146897039 to 146897059 20 - TSS region transcription start site region 54491
Tssr54492 5 146897091 to 146897101 10 - TSS region transcription start site region 54492
Tssr54493 5 146920374 to 146920383 9 - TSS region transcription start site region 54493
Cpgi17035 5 146948402 to 146949218 816 CpG island CpG island 17035
Tssr49796 5 146948640 to 146948716 76 + TSS region transcription start site region 49796
Gtf3a 5 146948657 to 146955614 6957 + protein coding gene general transcription factor III A
Tssr49797 5 146948721 to 146948728 7 + TSS region transcription start site region 49797
Tssr49798 5 146948729 to 146948748 19 + TSS region transcription start site region 49798
Tssr49799 5 146948755 to 146948760 5 + TSS region transcription start site region 49799
Tssr49800 5 146948763 to 146948774 11 + TSS region transcription start site region 49800
Tssr49801 5 146948794 to 146948801 7 + TSS region transcription start site region 49801
Mtif3 5 146951573 to 146963800 12227 - protein coding gene mitochondrial translational initiation factor 3
Cpgi17036 5 146963246 to 146963865 619 CpG island CpG island 17036
Tssr54494 5 146963742 to 146963805 63 - TSS region transcription start site region 54494
Cpgi17037 5 146974389 to 146974654 265 CpG island CpG island 17037
Gm46936 5 146978789 to 146981774 2985 - pseudogene predicted gene, 46936
Lnx2 5 147016655 to 147076572 59917 - protein coding gene ligand of numb-protein X 2
Tssr54495 5 147018349 to 147018363 14 - TSS region transcription start site region 54495
Cpgi17038 5 147024302 to 147024639 337 CpG island CpG island 17038
Tssr54496 5 147042664 to 147042673 9 - TSS region transcription start site region 54496
Tssr54497 5 147063294 to 147063304 10 - TSS region transcription start site region 54497
Tssr54498 5 147065790 to 147065796 6 - TSS region transcription start site region 54498
Cpgi17039 5 147076102 to 147078125 2023 CpG island CpG island 17039
Tssr49802 5 147076188 to 147076199 11 + TSS region transcription start site region 49802
Tssr54499 5 147076482 to 147076565 83 - TSS region transcription start site region 54499
Tssr54500 5 147076575 to 147076591 16 - TSS region transcription start site region 54500
Tssr49803 5 147076704 to 147076729 25 + TSS region transcription start site region 49803
Polr1d 5 147077346 to 147111361 34015 + protein coding gene polymerase (RNA) I polypeptide D
Tssr54501 5 147077388 to 147077419 31 - TSS region transcription start site region 54501
Tssr49804 5 147077525 to 147077542 17 + TSS region transcription start site region 49804
Tssr49805 5 147077545 to 147077585 40 + TSS region transcription start site region 49805
Rps10-ps4 5 147100562 to 147101053 491 - pseudogene ribosomal protein S10, pseudogene 4
Gm34994 5 147159300 to 147168623 9323 + lncRNA gene predicted gene, 34994
Cpgi17040 5 147186007 to 147186451 444 CpG island CpG island 17040
Cpgi17041 5 147186775 to 147187893 1118 CpG island CpG island 17041
Cpgi17042 5 147188191 to 147190515 2324 CpG island CpG island 17042
Tssr49806 5 147188678 to 147188684 6 + TSS region transcription start site region 49806
Gsx1 5 147188696 to 147190947 2251 + protein coding gene GS homeobox 1
Cpgi17043 5 147191254 to 147192005 751 CpG island CpG island 17043
Cpgi17044 5 147192448 to 147192720 272 CpG island CpG island 17044
Gm24556 5 147200124 to 147200253 129 - snoRNA gene predicted gene, 24556
Cpgi17045 5 147207746 to 147208321 575 CpG island CpG island 17045
Gm38751 5 147217824 to 147221865 4041 - lncRNA gene predicted gene, 38751
Tssr54502 5 147221803 to 147221815 12 - TSS region transcription start site region 54502
Tssr54503 5 147221836 to 147221854 18 - TSS region transcription start site region 54503
Cpgi17046 5 147227345 to 147227783 438 CpG island CpG island 17046
Plut 5 147228598 to 147271521 42923 - antisense lncRNA gene PDX1 associated lncRNA, upregulator of transcription
Tssr54504 5 147235544 to 147235557 13 - TSS region transcription start site region 54504
Gm38750 5 147236878 to 147238580 1702 - lncRNA gene predicted gene, 38750
Cpgi17047 5 147253618 to 147253805 187 CpG island CpG island 17047
Tssr49807 5 147270091 to 147270102 11 + TSS region transcription start site region 49807
Tssr49808 5 147270110 to 147270139 29 + TSS region transcription start site region 49808
Cpgi17048 5 147270130 to 147270670 540 CpG island CpG island 17048
Pdx1 5 147270131 to 147275149 5018 + protein coding gene pancreatic and duodenal homeobox 1
Tssr49809 5 147270146 to 147270168 22 + TSS region transcription start site region 49809
Cpgi17049 5 147274478 to 147274949 471 CpG island CpG island 17049
Gm27033 5 147280720 to 147281263 543 + lincRNA gene predicted gene, 27033
Mir7k 5 147283189 to 147283298 109 - miRNA gene microRNA 7k
Gm35112 5 147290184 to 147297978 7794 - lncRNA gene predicted gene, 35112
Cpgi17050 5 147293319 to 147293481 162 CpG island CpG island 17050
Cpgi17051 5 147294093 to 147294578 485 CpG island CpG island 17051
Cpgi17052 5 147299517 to 147300099 582 CpG island CpG island 17052
Cdx2 5 147300900 to 147307249 6349 - protein coding gene caudal type homeobox 2
Cpgi17053 5 147301770 to 147301982 212 CpG island CpG island 17053
Cpgi17054 5 147304288 to 147305583 1295 CpG island CpG island 17054
Tssr49810 5 147304944 to 147304946 2 + TSS region transcription start site region 49810
Tssr54505 5 147305449 to 147305459 10 - TSS region transcription start site region 54505
Cpgi17055 5 147305726 to 147307620 1894 CpG island CpG island 17055
Tssr54506 5 147307038 to 147307049 11 - TSS region transcription start site region 54506
Tssr54507 5 147307063 to 147307139 76 - TSS region transcription start site region 54507
Tssr54508 5 147307216 to 147307230 14 - TSS region transcription start site region 54508
Tssr54509 5 147307233 to 147307256 23 - TSS region transcription start site region 54509
Tssr54510 5 147307264 to 147307281 17 - TSS region transcription start site region 54510
Cpgi17056 5 147312907 to 147313270 363 CpG island CpG island 17056
Cpgi17057 5 147314939 to 147315713 774 CpG island CpG island 17057
Urad 5 147314984 to 147322440 7456 - protein coding gene ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase
Tssr54511 5 147322246 to 147322276 30 - TSS region transcription start site region 54511
Tssr54512 5 147322339 to 147322362 23 - TSS region transcription start site region 54512
Tssr54513 5 147322380 to 147322383 3 - TSS region transcription start site region 54513
Tssr54514 5 147322387 to 147322410 23 - TSS region transcription start site region 54514
Tssr54515 5 147322435 to 147322449 14 - TSS region transcription start site region 54515
Gm29778 5 147325869 to 147326334 465 - pseudogene predicted gene, 29778
Tssr54516 5 147326356 to 147326381 25 - TSS region transcription start site region 54516
Flt3 5 147330741 to 147400489 69748 - protein coding gene FMS-like tyrosine kinase 3
Tssr54517 5 147339046 to 147339080 34 - TSS region transcription start site region 54517
Tssr49811 5 147341268 to 147341273 5 + TSS region transcription start site region 49811
Tssr49812 5 147343139 to 147343175 36 + TSS region transcription start site region 49812
Gm26597 5 147399672 to 147401920 2248 + antisense lncRNA gene predicted gene, 26597
Cpgi17058 5 147399841 to 147400726 885 CpG island CpG island 17058
Tssr54518 5 147400279 to 147400288 9 - TSS region transcription start site region 54518
Tssr54519 5 147400300 to 147400332 32 - TSS region transcription start site region 54519
Tssr54520 5 147400352 to 147400377 25 - TSS region transcription start site region 54520
Tssr54521 5 147400388 to 147400389 1 - TSS region transcription start site region 54521
Tssr49813 5 147400417 to 147400426 9 + TSS region transcription start site region 49813
Tssr49814 5 147400448 to 147400473 25 + TSS region transcription start site region 49814
Cpgi17059 5 147408812 to 147409105 293 CpG island CpG island 17059
Gm6054 5 147408982 to 147409359 377 + pseudogene predicted gene 6054
Gm29793 5 147409920 to 147410379 459 + pseudogene predicted gene, 29793
Tssr49815 5 147418588 to 147418629 41 + TSS region transcription start site region 49815
D5Ertd605e 5 147418620 to 147423044 4424 + lincRNA gene DNA segment, Chr 5, ERATO Doi 605, expressed
Tssr49816 5 147418631 to 147418637 6 + TSS region transcription start site region 49816
Tssr49817 5 147418646 to 147418659 13 + TSS region transcription start site region 49817
Tssr54522 5 147426539 to 147426565 26 - TSS region transcription start site region 54522
Tssr54523 5 147426577 to 147426589 12 - TSS region transcription start site region 54523
Gm43461 5 147427738 to 147428733 995 + unclassified gene predicted gene 43461
Gm43460 5 147428830 to 147429886 1056 + unclassified gene predicted gene 43460
Cpgi17060 5 147429737 to 147431691 1954 CpG island CpG island 17060
Tssr54524 5 147429811 to 147429815 4 - TSS region transcription start site region 54524
Tssr49818 5 147429961 to 147429979 18 + TSS region transcription start site region 49818
Tssr54525 5 147430060 to 147430115 55 - TSS region transcription start site region 54525
Tssr49819 5 147430153 to 147430217 64 + TSS region transcription start site region 49819
Pan3 5 147430161 to 147548502 118341 + protein coding gene PAN3 poly(A) specific ribonuclease subunit
Tssr49820 5 147430222 to 147430244 22 + TSS region transcription start site region 49820
Tssr49821 5 147430290 to 147430302 12 + TSS region transcription start site region 49821
Tssr49822 5 147430377 to 147430401 24 + TSS region transcription start site region 49822
Tssr49823 5 147430407 to 147430545 138 + TSS region transcription start site region 49823
Tssr49824 5 147430730 to 147430743 13 + TSS region transcription start site region 49824
Tssr49825 5 147430838 to 147430863 25 + TSS region transcription start site region 49825
Tssr54526 5 147431318 to 147431363 45 - TSS region transcription start site region 54526
Tssr49826 5 147431592 to 147431598 6 + TSS region transcription start site region 49826
Tssr49827 5 147432013 to 147432017 4 + TSS region transcription start site region 49827
Tssr49828 5 147439332 to 147439340 8 + TSS region transcription start site region 49828
Gm42883 5 147439390 to 147439611 221 + pseudogene predicted gene 42883
Tssr49829 5 147468462 to 147468471 9 + TSS region transcription start site region 49829
Tssr49830 5 147488125 to 147488145 20 + TSS region transcription start site region 49830
Tssr49831 5 147500721 to 147500724 3 + TSS region transcription start site region 49831
Tssr49832 5 147506170 to 147506173 3 + TSS region transcription start site region 49832
Tssr49833 5 147513745 to 147513748 3 + TSS region transcription start site region 49833
Tssr49834 5 147519697 to 147519720 23 + TSS region transcription start site region 49834
Tssr49835 5 147546516 to 147546535 19 + TSS region transcription start site region 49835
Tssr49836 5 147546594 to 147546600 6 + TSS region transcription start site region 49836
Tssr49837 5 147548070 to 147548074 4 + TSS region transcription start site region 49837
Tssr54527 5 147557782 to 147557789 7 - TSS region transcription start site region 54527
Flt1 5 147562196 to 147726005 163809 - protein coding gene FMS-like tyrosine kinase 1
Tssr54528 5 147566744 to 147566757 13 - TSS region transcription start site region 54528
Tssr54529 5 147566770 to 147566777 7 - TSS region transcription start site region 54529
D5Mit181 5 147576282 to 147576428 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 181
Tssr54530 5 147592473 to 147592474 1 - TSS region transcription start site region 54530
Tssr54531 5 147637299 to 147637314 15 - TSS region transcription start site region 54531
Tssr54532 5 147637460 to 147637467 7 - TSS region transcription start site region 54532
Tssr54533 5 147637492 to 147637503 11 - TSS region transcription start site region 54533
Gm35383 5 147658787 to 147668887 10100 + lncRNA gene predicted gene, 35383
Tssr49838 5 147681909 to 147681918 9 + TSS region transcription start site region 49838
Tssr54534 5 147688036 to 147688044 8 - TSS region transcription start site region 54534
D5Dcr8 5 147694583 to 147694680 97 DNA segment DNA segment, Chr 5, Derry C. Roopenian 8