Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:146162188-146233007

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19 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm6309 5 146168029 to 146170763 2734 - protein coding gene predicted gene 6309
1700001J03Rik 5 146182450 to 146185304 2854 - protein coding gene RIKEN cDNA 1700001J03 gene
Tssr54469 5 146184294 to 146184317 23 - TSS region transcription start site region 54469
Tssr54470 5 146185312 to 146185320 8 - TSS region transcription start site region 54470
B230303O12Rik 5 146188620 to 146194809 6189 - lincRNA gene RIKEN cDNA B230303O12 gene
Cyp3a60-ps 5 146197188 to 146198007 819 + pseudogene cytochrome P450, family 3, subfamily a, member 60, pseudogene
Gm34248 5 146199985 to 146200458 473 - pseudogene predicted gene, 34248
Gm43625 5 146203251 to 146204789 1538 - lincRNA gene predicted gene 43625
Rnf6 5 146209193 to 146221457 12264 - protein coding gene ring finger protein (C3H2C3 type) 6
Tssr54471 5 146209642 to 146209685 43 - TSS region transcription start site region 54471
Cpgi17025 5 146220668 to 146221677 1009 CpG island CpG island 17025
Tssr54472 5 146220906 to 146220987 81 - TSS region transcription start site region 54472
Tssr54473 5 146221391 to 146221420 29 - TSS region transcription start site region 54473
Tssr54474 5 146221426 to 146221444 18 - TSS region transcription start site region 54474
Gm38745 5 146223717 to 146229035 5318 + lncRNA gene predicted gene, 38745
Cpgi17026 5 146230813 to 146232014 1201 CpG island CpG island 17026
Tssr49768 5 146231163 to 146231186 23 + TSS region transcription start site region 49768
Tssr49769 5 146231211 to 146231274 63 + TSS region transcription start site region 49769
Cdk8 5 146231230 to 146302874 71644 + protein coding gene cyclin-dependent kinase 8