Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:145814294-146554317

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Cyp3a57-Cyp3a59)1Ahs 5 145345279 to 146113287 768008 chromosomal deletion deletion, Chr 5, Alfred H Schinkel 1
Del(5Cyp3a57-Cyp3a59)1Arte 5 145345279 to 146113287 768008 chromosomal deletion deletion, Chr5, TaconicArtemis 1
Del(5Cyp3a57-Cyp3a59)1Mtos 5 145345279 to 146113287 768008 chromosomal deletion deletion, Chr 5, Mitsuo Oshimura 1
Gm19089 5 145823610 to 145827940 4330 + pseudogene predicted gene, 19089
Gm38744 5 145834612 to 145838276 3664 + lncRNA gene predicted gene, 38744
Cyp3a11 5 145854607 to 145879854 25247 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 11
Tssr54440 5 145854960 to 145854971 11 - TSS region transcription start site region 54440
Tssr54441 5 145855064 to 145855076 12 - TSS region transcription start site region 54441
Tssr54442 5 145855081 to 145855094 13 - TSS region transcription start site region 54442
Tssr54443 5 145856025 to 145856032 7 - TSS region transcription start site region 54443
Tssr54444 5 145857765 to 145857786 21 - TSS region transcription start site region 54444
Tssr54445 5 145860141 to 145860158 17 - TSS region transcription start site region 54445
D5Mit409 5 145862106 to 145862303 197 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 409
Tssr54446 5 145868581 to 145868598 17 - TSS region transcription start site region 54446
Tssr54447 5 145868990 to 145869015 25 - TSS region transcription start site region 54447
Tssr54448 5 145872400 to 145872423 23 - TSS region transcription start site region 54448
Tssr54449 5 145872466 to 145872478 12 - TSS region transcription start site region 54449
Tssr54450 5 145873501 to 145873532 31 - TSS region transcription start site region 54450
Tssr54451 5 145875196 to 145875245 49 - TSS region transcription start site region 54451
Tssr54452 5 145875267 to 145875293 26 - TSS region transcription start site region 54452
Tssr54453 5 145879311 to 145879344 33 - TSS region transcription start site region 54453
Tssr54454 5 145879857 to 145879872 15 - TSS region transcription start site region 54454
Tssr54455 5 145880056 to 145880057 1 - TSS region transcription start site region 54455
Gm42431 5 145918556 to 145918878 322 - pseudogene predicted gene 42431
Gm43624 5 145956052 to 145965050 8998 + pseudogene predicted gene 43624
Gm43115 5 145968410 to 145968569 159 + pseudogene predicted gene 43115
Cyp3a25 5 145977194 to 146009618 32424 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 25
Tssr54456 5 145980377 to 145980385 8 - TSS region transcription start site region 54456
Tssr49764 5 145980954 to 145980972 18 + TSS region transcription start site region 49764
Tssr54457 5 145981228 to 145981239 11 - TSS region transcription start site region 54457
Tssr54458 5 145981255 to 145981281 26 - TSS region transcription start site region 54458
Tssr54459 5 145981300 to 145981313 13 - TSS region transcription start site region 54459
Tssr54460 5 145981321 to 145981331 10 - TSS region transcription start site region 54460
Tssr54461 5 145981456 to 145981484 28 - TSS region transcription start site region 54461
Tssr54462 5 145997149 to 145997159 10 - TSS region transcription start site region 54462
Tssr54463 5 145997275 to 145997281 6 - TSS region transcription start site region 54463
Tssr54464 5 146009021 to 146009049 28 - TSS region transcription start site region 54464
Tssr54465 5 146009082 to 146009090 8 - TSS region transcription start site region 54465
Tssr54466 5 146009096 to 146009112 16 - TSS region transcription start site region 54466
Tssr54467 5 146009701 to 146009714 13 - TSS region transcription start site region 54467
Gm8454 5 146017031 to 146017841 810 - pseudogene predicted gene 8454
Gm43239 5 146027690 to 146027890 200 - pseudogene predicted gene 43239
D5Mit378 5 146028306 to 146028421 115 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 378
Tssr1750 5 146070230 to 146070246 16 - TSS region transcription start site region 1750
Gm8458 5 146070906 to 146071724 818 + pseudogene predicted gene 8458
Tssr49765 5 146079167 to 146079188 21 + TSS region transcription start site region 49765
Tssr49766 5 146079254 to 146079258 4 + TSS region transcription start site region 49766
Cyp3a59 5 146079257 to 146113287 34030 + protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 59
Tssr49767 5 146109203 to 146109214 11 + TSS region transcription start site region 49767
Gm5565 5 146157912 to 146160575 2663 - protein coding gene predicted gene 5565
Tssr54468 5 146160538 to 146160554 16 - TSS region transcription start site region 54468
Gm6309 5 146168029 to 146170763 2734 - protein coding gene predicted gene 6309
1700001J03Rik 5 146182450 to 146185304 2854 - protein coding gene RIKEN cDNA 1700001J03 gene
Tssr54469 5 146184294 to 146184317 23 - TSS region transcription start site region 54469
Tssr54470 5 146185312 to 146185320 8 - TSS region transcription start site region 54470
B230303O12Rik 5 146188620 to 146194809 6189 - lincRNA gene RIKEN cDNA B230303O12 gene
Cyp3a60-ps 5 146197188 to 146198007 819 + pseudogene cytochrome P450, family 3, subfamily a, member 60, pseudogene
Gm34248 5 146199985 to 146200458 473 - pseudogene predicted gene, 34248
Gm43625 5 146203251 to 146204789 1538 - lincRNA gene predicted gene 43625
Rnf6 5 146209193 to 146221457 12264 - protein coding gene ring finger protein (C3H2C3 type) 6
Tssr54471 5 146209642 to 146209685 43 - TSS region transcription start site region 54471
Cpgi17025 5 146220668 to 146221677 1009 CpG island CpG island 17025
Tssr54472 5 146220906 to 146220987 81 - TSS region transcription start site region 54472
Tssr54473 5 146221391 to 146221420 29 - TSS region transcription start site region 54473
Tssr54474 5 146221426 to 146221444 18 - TSS region transcription start site region 54474
Gm38745 5 146223717 to 146229035 5318 + lncRNA gene predicted gene, 38745
Cpgi17026 5 146230813 to 146232014 1201 CpG island CpG island 17026
Tssr49768 5 146231163 to 146231186 23 + TSS region transcription start site region 49768
Tssr49769 5 146231211 to 146231274 63 + TSS region transcription start site region 49769
Cdk8 5 146231230 to 146302874 71644 + protein coding gene cyclin-dependent kinase 8
6030446M11Rik 5 146242998 to 146243865 867 unclassified gene RIKEN cDNA 6030446M11 gene
Gm15739 5 146248551 to 146249422 871 + pseudogene predicted gene 15739
Cpgi17027 5 146260972 to 146261364 392 CpG island CpG island 17027
Tssr49770 5 146260984 to 146261028 44 + TSS region transcription start site region 49770
Tssr49771 5 146261048 to 146261088 40 + TSS region transcription start site region 49771
Tssr49772 5 146261145 to 146261177 32 + TSS region transcription start site region 49772
Tssr49773 5 146261239 to 146261253 14 + TSS region transcription start site region 49773
Tssr49774 5 146261255 to 146261295 40 + TSS region transcription start site region 49774
Tssr49775 5 146261299 to 146261327 28 + TSS region transcription start site region 49775
Tssr49776 5 146261333 to 146261344 11 + TSS region transcription start site region 49776
Tssr54475 5 146261343 to 146261362 19 - TSS region transcription start site region 54475
Tssr49777 5 146292628 to 146292649 21 + TSS region transcription start site region 49777
Gm38747 5 146353533 to 146362499 8966 + lncRNA gene predicted gene, 38747
Cpgi17028 5 146384934 to 146385670 736 CpG island CpG island 17028
Tssr49778 5 146384947 to 146384994 47 + TSS region transcription start site region 49778
Wasf3 5 146384990 to 146473615 88625 + protein coding gene WAS protein family, member 3
Tssr1751 5 146385235 to 146385236 1 + TSS region transcription start site region 1751
Tssr49779 5 146385239 to 146385252 13 + TSS region transcription start site region 49779
Tssr49780 5 146385262 to 146385313 51 + TSS region transcription start site region 49780
Tssr49781 5 146455561 to 146455566 5 + TSS region transcription start site region 49781
Tssr49782 5 146472658 to 146472675 17 + TSS region transcription start site region 49782
Gm6408 5 146481965 to 146484704 2739 + protein coding gene predicted gene 6408
Gm6370 5 146491363 to 146494132 2769 + protein coding gene predicted gene 6370
4930449I24Rik 5 146502399 to 146505183 2784 + protein coding gene RIKEN cDNA 4930449I24 gene
Gm3402 5 146514123 to 146516902 2779 + protein coding gene predicted gene 3402
Gm3404 5 146525801 to 146528553 2752 + protein coding gene predicted gene 3404
Gm3409 5 146537647 to 146540427 2780 + protein coding gene predicted gene 3409