Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:145165415-145816968

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptcd1 5 145147514 to 145167108 19594 - protein coding gene pentatricopeptide repeat domain 1
Cpgi17019 5 145166893 to 145167855 962 CpG island CpG island 17019
Tssr54429 5 145167010 to 145167028 18 - TSS region transcription start site region 54429
Tssr54430 5 145167031 to 145167077 46 - TSS region transcription start site region 54430
Tssr49745 5 145167207 to 145167259 52 + TSS region transcription start site region 49745
Cpsf4 5 145167213 to 145182041 14828 + protein coding gene cleavage and polyadenylation specific factor 4
Atp5j2 5 145183706 to 145191592 7886 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
Cpgi17020 5 145190950 to 145191686 736 CpG island CpG island 17020
Tssr54431 5 145191534 to 145191548 14 - TSS region transcription start site region 54431
Tssr54432 5 145191549 to 145191565 16 - TSS region transcription start site region 54432
Tssr54433 5 145191566 to 145191572 6 - TSS region transcription start site region 54433
Zkscan14 5 145194946 to 145201868 6922 - protein coding gene zinc finger with KRAB and SCAN domains 14
Cpgi17021 5 145201282 to 145201953 671 CpG island CpG island 17021
Tssr54434 5 145201829 to 145201873 44 - TSS region transcription start site region 54434
Tssr54435 5 145201875 to 145201891 16 - TSS region transcription start site region 54435
Tssr49746 5 145204523 to 145204574 51 + TSS region transcription start site region 49746
Zkscan5 5 145204562 to 145221750 17188 + protein coding gene zinc finger with KRAB and SCAN domains 5
Tssr49747 5 145208555 to 145208562 7 + TSS region transcription start site region 49747
Tssr1749 5 145214533 to 145214539 6 + TSS region transcription start site region 1749
Cpgi17022 5 145218282 to 145219033 751 CpG island CpG island 17022
Gm6287 5 145230512 to 145232301 1789 unclassified gene predicted gene 6287
Cpgi17023 5 145231333 to 145232377 1044 CpG island CpG island 17023
Tssr54436 5 145231559 to 145231570 11 - TSS region transcription start site region 54436
Tssr49748 5 145231710 to 145231754 44 + TSS region transcription start site region 49748
Zfp655 5 145231715 to 145247302 15587 + protein coding gene zinc finger protein 655
Tssr49749 5 145231757 to 145231783 26 + TSS region transcription start site region 49749
Tssr49750 5 145233179 to 145233186 7 + TSS region transcription start site region 49750
Tssr49751 5 145236044 to 145236076 32 + TSS region transcription start site region 49751
Tssr49752 5 145236927 to 145236936 9 + TSS region transcription start site region 49752
Tssr49753 5 145241312 to 145241325 13 + TSS region transcription start site region 49753
Tssr49754 5 145244077 to 145244108 31 + TSS region transcription start site region 49754
Tssr49755 5 145249407 to 145249410 3 + TSS region transcription start site region 49755
Tssr49756 5 145260176 to 145260179 3 + TSS region transcription start site region 49756
Tssr49757 5 145263919 to 145263921 2 + TSS region transcription start site region 49757
Gm9710 5 145265879 to 145266377 498 - pseudogene predicted gene 9710
Gm38740 5 145279506 to 145280623 1117 - lncRNA gene predicted gene, 38740
Cpgi17024 5 145280381 to 145281017 636 CpG island CpG island 17024
Tssr49758 5 145280464 to 145280510 46 + TSS region transcription start site region 49758
Zscan25 5 145280500 to 145291278 10778 + protein coding gene zinc finger and SCAN domain containing 25
Tssr49759 5 145280527 to 145280566 39 + TSS region transcription start site region 49759
Gm42636 5 145292770 to 145295008 2238 + unclassified gene predicted gene 42636
Tssr49760 5 145345254 to 145345270 16 + TSS region transcription start site region 49760
Cyp3a57 5 145345279 to 145390926 45647 + protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 57
Del(5Cyp3a57-Cyp3a59)1Mtos 5 145345279 to 146113287 768008 chromosomal deletion deletion, Chr 5, Mitsuo Oshimura 1
Del(5Cyp3a57-Cyp3a59)1Arte 5 145345279 to 146113287 768008 chromosomal deletion deletion, Chr5, TaconicArtemis 1
Del(5Cyp3a57-Cyp3a59)1Ahs 5 145345279 to 146113287 768008 chromosomal deletion deletion, Chr 5, Alfred H Schinkel 1
Tssr49761 5 145371716 to 145371718 2 + TSS region transcription start site region 49761
Gm2314 5 145400868 to 145401453 585 + pseudogene predicted gene 2314
Tssr49762 5 145404968 to 145404973 5 + TSS region transcription start site region 49762
Gm42859 5 145409648 to 145409840 192 + pseudogene predicted gene 42859
Cyp3a16 5 145436309 to 145469723 33414 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 16
Gm21016 5 145490415 to 145491968 1553 - pseudogene predicted gene, 21016
Cyp3a58-ps 5 145492612 to 145532629 40017 + pseudogene cytochrome P450, family 3, subfamily a, member 58, pseudogene
Gm42863 5 145504097 to 145507054 2957 - unclassified gene predicted gene 42863
Cyp3a41b 5 145558664 to 145584730 26066 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 41B
Tssr54437 5 145584723 to 145584727 4 - TSS region transcription start site region 54437
Gm43381 5 145595796 to 145595960 164 - pseudogene predicted gene 43381
Selenok-ps7 5 145623085 to 145623367 282 - pseudogene selenoprotein K, pseudogene 7
Cyp3a63-ps 5 145624092 to 145633993 9901 - pseudogene cytochrome P450, family 3, subfamily a, member 63, pseudogene
Cyp3a41a 5 145694049 to 145720136 26087 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 41A
Tssr54438 5 145720124 to 145720136 12 - TSS region transcription start site region 54438
Gm43626 5 145760545 to 145760706 161 + pseudogene predicted gene 43626
Selenok-ps2 5 145766200 to 145766914 714 - pseudogene selenoprotein K, pseudogene 2
Cyp3a44 5 145773983 to 145805874 31891 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 44
Tssr54439 5 145805862 to 145805876 14 - TSS region transcription start site region 54439
Tssr49763 5 145809784 to 145809786 2 + TSS region transcription start site region 49763