Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:144766495-145075830

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trrap 5 144767738 to 144859778 92040 + protein coding gene transformation/transcription domain-associated protein
Cpgi17013 5 144767848 to 144769134 1286 CpG island CpG island 17013
Tssr49711 5 144767932 to 144767990 58 + TSS region transcription start site region 49711
Tssr49712 5 144768116 to 144768123 7 + TSS region transcription start site region 49712
Tssr49713 5 144768141 to 144768154 13 + TSS region transcription start site region 49713
Tssr49714 5 144768158 to 144768182 24 + TSS region transcription start site region 49714
Tssr49715 5 144768504 to 144768531 27 + TSS region transcription start site region 49715
Tssr49716 5 144768536 to 144768552 16 + TSS region transcription start site region 49716
Tssr49717 5 144768555 to 144768568 13 + TSS region transcription start site region 49717
Tssr49718 5 144771327 to 144771340 13 + TSS region transcription start site region 49718
Gm23995 5 144774425 to 144774553 128 + snoRNA gene predicted gene, 23995
Tssr49719 5 144789023 to 144789029 6 + TSS region transcription start site region 49719
Cpgi17014 5 144845251 to 144845647 396 CpG island CpG island 17014
Tssr49720 5 144855213 to 144855217 4 + TSS region transcription start site region 49720
Smurf1 5 144876495 to 144965830 89335 - protein coding gene SMAD specific E3 ubiquitin protein ligase 1
Tssr54413 5 144890232 to 144890244 12 - TSS region transcription start site region 54413
Mir7039 5 144896732 to 144896816 84 - miRNA gene microRNA 7039
Gm33821 5 144918455 to 144922772 4317 + lncRNA gene predicted gene, 33821
Tssr49721 5 144919083 to 144919089 6 + TSS region transcription start site region 49721
Cpgi17015 5 144964730 to 144966481 1751 CpG island CpG island 17015
Tssr54414 5 144965763 to 144965786 23 - TSS region transcription start site region 54414
Tssr54415 5 144965793 to 144965877 84 - TSS region transcription start site region 54415
Tssr54416 5 144965896 to 144965909 13 - TSS region transcription start site region 54416
Kpna7 5 144983727 to 145009636 25909 - protein coding gene karyopherin alpha 7 (importin alpha 8)
Gm33904 5 145007949 to 145020254 12305 + lncRNA gene predicted gene, 33904
Gm43563 5 145020178 to 145021018 840 + pseudogene predicted gene 43563
Gm4871 5 145029600 to 145032754 3154 - protein coding gene predicted gene 4871
Gm43562 5 145032836 to 145033459 623 + lincRNA gene predicted gene 43562
Gm43561 5 145035374 to 145035821 447 - pseudogene predicted gene 43561
Tssr1746 5 145042978 to 145042983 5 + TSS region transcription start site region 1746
Tssr1747 5 145042986 to 145042998 12 + TSS region transcription start site region 1747
1700018F24Rik 5 145042990 to 145045681 2691 + protein coding gene RIKEN cDNA 1700018F24 gene