Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:144580213-145130217

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xiaf2 5 126090176 to 144640558 18550382 heritable phenotypic marker X inactivation autosomal factor 2
D5Mit43 5 144640428 to 144640558 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 43
D5Dcr36 5 144640473 to 144640569 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 36
D5Mit43.2 5 144640535 to 144640655 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 43.2
Gm6272 5 144723627 to 144723797 170 - pseudogene predicted pseudogene 6272
Tmem130 5 144735915 to 144761578 25663 - protein coding gene transmembrane protein 130
Tssr54409 5 144736542 to 144736553 11 - TSS region transcription start site region 54409
Cpgi17012 5 144761236 to 144761919 683 CpG island CpG island 17012
Tssr54410 5 144761565 to 144761576 11 - TSS region transcription start site region 54410
Tssr54411 5 144761578 to 144761631 53 - TSS region transcription start site region 54411
Tssr54412 5 144761633 to 144761644 11 - TSS region transcription start site region 54412
Gm38739 5 144761714 to 144764217 2503 + lncRNA gene predicted gene, 38739
Trrap 5 144767738 to 144859778 92040 + protein coding gene transformation/transcription domain-associated protein
Cpgi17013 5 144767848 to 144769134 1286 CpG island CpG island 17013
Tssr49711 5 144767932 to 144767990 58 + TSS region transcription start site region 49711
Tssr49712 5 144768116 to 144768123 7 + TSS region transcription start site region 49712
Tssr49713 5 144768141 to 144768154 13 + TSS region transcription start site region 49713
Tssr49714 5 144768158 to 144768182 24 + TSS region transcription start site region 49714
Tssr49715 5 144768504 to 144768531 27 + TSS region transcription start site region 49715
Tssr49716 5 144768536 to 144768552 16 + TSS region transcription start site region 49716
Tssr49717 5 144768555 to 144768568 13 + TSS region transcription start site region 49717
Tssr49718 5 144771327 to 144771340 13 + TSS region transcription start site region 49718
Gm23995 5 144774425 to 144774553 128 + snoRNA gene predicted gene, 23995
Tssr49719 5 144789023 to 144789029 6 + TSS region transcription start site region 49719
Cpgi17014 5 144845251 to 144845647 396 CpG island CpG island 17014
Tssr49720 5 144855213 to 144855217 4 + TSS region transcription start site region 49720
Smurf1 5 144876495 to 144965830 89335 - protein coding gene SMAD specific E3 ubiquitin protein ligase 1
Tssr54413 5 144890232 to 144890244 12 - TSS region transcription start site region 54413
Mir7039 5 144896732 to 144896816 84 - miRNA gene microRNA 7039
Gm33821 5 144918455 to 144922772 4317 + lncRNA gene predicted gene, 33821
Tssr49721 5 144919083 to 144919089 6 + TSS region transcription start site region 49721
Cpgi17015 5 144964730 to 144966481 1751 CpG island CpG island 17015
Tssr54414 5 144965763 to 144965786 23 - TSS region transcription start site region 54414
Tssr54415 5 144965793 to 144965877 84 - TSS region transcription start site region 54415
Tssr54416 5 144965896 to 144965909 13 - TSS region transcription start site region 54416
Kpna7 5 144983727 to 145009636 25909 - protein coding gene karyopherin alpha 7 (importin alpha 8)
Gm33904 5 145007949 to 145020254 12305 + lncRNA gene predicted gene, 33904
Gm43563 5 145020178 to 145021018 840 + pseudogene predicted gene 43563
Gm4871 5 145029600 to 145032754 3154 - protein coding gene predicted gene 4871
Gm43562 5 145032836 to 145033459 623 + lincRNA gene predicted gene 43562
Gm43561 5 145035374 to 145035821 447 - pseudogene predicted gene 43561
Tssr1746 5 145042978 to 145042983 5 + TSS region transcription start site region 1746
Tssr1747 5 145042986 to 145042998 12 + TSS region transcription start site region 1747
1700018F24Rik 5 145042990 to 145045681 2691 + protein coding gene RIKEN cDNA 1700018F24 gene
Cpgi17016 5 145083633 to 145084226 593 CpG island CpG island 17016
Tssr49722 5 145083831 to 145083887 56 + TSS region transcription start site region 49722
Arpc1a 5 145083869 to 145108756 24887 + protein coding gene actin related protein 2/3 complex, subunit 1A
Tssr49723 5 145083891 to 145083915 24 + TSS region transcription start site region 49723
Tssr49724 5 145084058 to 145084069 11 + TSS region transcription start site region 49724
Tssr49725 5 145084100 to 145084109 9 + TSS region transcription start site region 49725
Tssr49726 5 145104451 to 145104464 13 + TSS region transcription start site region 49726
Tssr49727 5 145104473 to 145104492 19 + TSS region transcription start site region 49727
Tssr49728 5 145104556 to 145104567 11 + TSS region transcription start site region 49728
Tssr49729 5 145104586 to 145104648 62 + TSS region transcription start site region 49729
Tssr1748 5 145104651 to 145104656 5 + TSS region transcription start site region 1748
Cpgi17017 5 145113795 to 145115040 1245 CpG island CpG island 17017
Tssr49730 5 145114249 to 145114275 26 + TSS region transcription start site region 49730
Arpc1b 5 145114256 to 145128186 13930 + protein coding gene actin related protein 2/3 complex, subunit 1B
Tssr49731 5 145114280 to 145114300 20 + TSS region transcription start site region 49731
Tssr49732 5 145123561 to 145123615 54 + TSS region transcription start site region 49732
Tssr49733 5 145123693 to 145123729 36 + TSS region transcription start site region 49733
Tssr49734 5 145126876 to 145126905 29 + TSS region transcription start site region 49734
Tssr49735 5 145127914 to 145127915 1 + TSS region transcription start site region 49735
Tssr49736 5 145127919 to 145127938 19 + TSS region transcription start site region 49736
Tssr49737 5 145127983 to 145127999 16 + TSS region transcription start site region 49737
Tssr49738 5 145128004 to 145128007 3 + TSS region transcription start site region 49738
Tssr49739 5 145128017 to 145128034 17 + TSS region transcription start site region 49739
Tssr54417 5 145128055 to 145128059 4 - TSS region transcription start site region 54417
Tssr49740 5 145128083 to 145128117 34 + TSS region transcription start site region 49740
Tssr54418 5 145128107 to 145128156 49 - TSS region transcription start site region 54418
Pdap1 5 145128770 to 145140089 11319 - protein coding gene PDGFA associated protein 1