Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:144323867-144603958

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bri3 5 144244437 to 144446757 202320 + protein coding gene brain protein I3
Baiap2l1 5 144264526 to 144358112 93586 - protein coding gene BAI1-associated protein 2-like 1
Cpgi17007 5 144357401 to 144358846 1445 CpG island CpG island 17007
Dmrt1i 5 144357923 to 144361005 3082 + sense intronic lncRNA gene Dmrt1 interacting ncRNA
Tssr54402 5 144357992 to 144358001 9 - TSS region transcription start site region 54402
Tssr54403 5 144358003 to 144358008 5 - TSS region transcription start site region 54403
Tssr54404 5 144358045 to 144358101 56 - TSS region transcription start site region 54404
Tssr54405 5 144358103 to 144358123 20 - TSS region transcription start site region 54405
Tssr49707 5 144358724 to 144358727 3 + TSS region transcription start site region 49707
Tssr49708 5 144406525 to 144406551 26 + TSS region transcription start site region 49708
Gm15709 5 144406602 to 144406814 212 + pseudogene predicted gene 15709
Cpgi17008 5 144408424 to 144408709 285 CpG island CpG island 17008
Gm33552 5 144423004 to 144427232 4228 - lncRNA gene predicted gene, 33552
D5Mit429 5 144463867 to 144463958 91 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 429
Gm33714 5 144465914 to 144479799 13885 - lncRNA gene predicted gene, 33714
Tssr54406 5 144479678 to 144479691 13 - TSS region transcription start site region 54406
Tssr54407 5 144479705 to 144479716 11 - TSS region transcription start site region 54407
Tssr54408 5 144479738 to 144479753 15 - TSS region transcription start site region 54408
Gm33765 5 144495100 to 144520139 25039 - lncRNA gene predicted gene, 33765
D5Dcr35 5 144536489 to 144536591 102 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 35
4930568B11Rik 5 144544887 to 144546035 1148 unclassified gene RIKEN cDNA 4930568B11 gene
Cpgi17009 5 144545177 to 144546922 1745 CpG island CpG island 17009
Tssr49709 5 144545883 to 144545889 6 + TSS region transcription start site region 49709
Nptx2 5 144545902 to 144557478 11576 + protein coding gene neuronal pentraxin 2
Cpgi17010 5 144548109 to 144548296 187 CpG island CpG island 17010
Cpgi17011 5 144556172 to 144556447 275 CpG island CpG island 17011
Tssr49710 5 144556576 to 144556580 4 + TSS region transcription start site region 49710
D5Mit191 5 144567631 to 144567778 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 191