Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:144259586-145949648

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207 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xiaf2 5 126090176 to 144640558 18550382 heritable phenotypic marker X inactivation autosomal factor 2
Bri3 5 144244437 to 144446757 202320 + protein coding gene brain protein I3
Gm38675 5 144256221 to 144263819 7598 + lncRNA gene predicted gene, 38675
Baiap2l1 5 144264526 to 144358112 93586 - protein coding gene BAI1-associated protein 2-like 1
Gm15708 5 144277061 to 144280513 3452 + sense intronic lncRNA gene predicted gene 15708
Tssr49706 5 144277218 to 144277258 40 + TSS region transcription start site region 49706
Tssr1745 5 144295110 to 144295117 7 + TSS region transcription start site region 1745
D5Mit377 5 144303910 to 144304135 225 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 377
Cpgi17007 5 144357401 to 144358846 1445 CpG island CpG island 17007
Dmrt1i 5 144357923 to 144361005 3082 + sense intronic lncRNA gene Dmrt1 interacting ncRNA
Tssr54402 5 144357992 to 144358001 9 - TSS region transcription start site region 54402
Tssr54403 5 144358003 to 144358008 5 - TSS region transcription start site region 54403
Tssr54404 5 144358045 to 144358101 56 - TSS region transcription start site region 54404
Tssr54405 5 144358103 to 144358123 20 - TSS region transcription start site region 54405
Tssr49707 5 144358724 to 144358727 3 + TSS region transcription start site region 49707
Tssr49708 5 144406525 to 144406551 26 + TSS region transcription start site region 49708
Gm15709 5 144406602 to 144406814 212 + pseudogene predicted gene 15709
Cpgi17008 5 144408424 to 144408709 285 CpG island CpG island 17008
Gm33552 5 144423004 to 144427232 4228 - lncRNA gene predicted gene, 33552
D5Mit429 5 144463867 to 144463958 91 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 429
Gm33714 5 144465914 to 144479799 13885 - lncRNA gene predicted gene, 33714
Tssr54406 5 144479678 to 144479691 13 - TSS region transcription start site region 54406
Tssr54407 5 144479705 to 144479716 11 - TSS region transcription start site region 54407
Tssr54408 5 144479738 to 144479753 15 - TSS region transcription start site region 54408
Gm33765 5 144495100 to 144520139 25039 - lncRNA gene predicted gene, 33765
D5Dcr35 5 144536489 to 144536591 102 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 35
4930568B11Rik 5 144544887 to 144546035 1148 unclassified gene RIKEN cDNA 4930568B11 gene
Cpgi17009 5 144545177 to 144546922 1745 CpG island CpG island 17009
Tssr49709 5 144545883 to 144545889 6 + TSS region transcription start site region 49709
Nptx2 5 144545902 to 144557478 11576 + protein coding gene neuronal pentraxin 2
Cpgi17010 5 144548109 to 144548296 187 CpG island CpG island 17010
Cpgi17011 5 144556172 to 144556447 275 CpG island CpG island 17011
Tssr49710 5 144556576 to 144556580 4 + TSS region transcription start site region 49710
D5Mit191 5 144567631 to 144567778 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 191
D5Mit43 5 144640428 to 144640558 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 43
D5Dcr36 5 144640473 to 144640569 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 36
D5Mit43.2 5 144640535 to 144640655 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 43.2
Gm6272 5 144723627 to 144723797 170 - pseudogene predicted pseudogene 6272
Tmem130 5 144735915 to 144761578 25663 - protein coding gene transmembrane protein 130
Tssr54409 5 144736542 to 144736553 11 - TSS region transcription start site region 54409
Cpgi17012 5 144761236 to 144761919 683 CpG island CpG island 17012
Tssr54410 5 144761565 to 144761576 11 - TSS region transcription start site region 54410
Tssr54411 5 144761578 to 144761631 53 - TSS region transcription start site region 54411
Tssr54412 5 144761633 to 144761644 11 - TSS region transcription start site region 54412
Gm38739 5 144761714 to 144764217 2503 + lncRNA gene predicted gene, 38739
Trrap 5 144767738 to 144859778 92040 + protein coding gene transformation/transcription domain-associated protein
Cpgi17013 5 144767848 to 144769134 1286 CpG island CpG island 17013
Tssr49711 5 144767932 to 144767990 58 + TSS region transcription start site region 49711
Tssr49712 5 144768116 to 144768123 7 + TSS region transcription start site region 49712
Tssr49713 5 144768141 to 144768154 13 + TSS region transcription start site region 49713
Tssr49714 5 144768158 to 144768182 24 + TSS region transcription start site region 49714
Tssr49715 5 144768504 to 144768531 27 + TSS region transcription start site region 49715
Tssr49716 5 144768536 to 144768552 16 + TSS region transcription start site region 49716
Tssr49717 5 144768555 to 144768568 13 + TSS region transcription start site region 49717
Tssr49718 5 144771327 to 144771340 13 + TSS region transcription start site region 49718
Gm23995 5 144774425 to 144774553 128 + snoRNA gene predicted gene, 23995
Tssr49719 5 144789023 to 144789029 6 + TSS region transcription start site region 49719
Cpgi17014 5 144845251 to 144845647 396 CpG island CpG island 17014
Tssr49720 5 144855213 to 144855217 4 + TSS region transcription start site region 49720
Smurf1 5 144876495 to 144965830 89335 - protein coding gene SMAD specific E3 ubiquitin protein ligase 1
Tssr54413 5 144890232 to 144890244 12 - TSS region transcription start site region 54413
Mir7039 5 144896732 to 144896816 84 - miRNA gene microRNA 7039
Gm33821 5 144918455 to 144922772 4317 + lncRNA gene predicted gene, 33821
Tssr49721 5 144919083 to 144919089 6 + TSS region transcription start site region 49721
Cpgi17015 5 144964730 to 144966481 1751 CpG island CpG island 17015
Tssr54414 5 144965763 to 144965786 23 - TSS region transcription start site region 54414
Tssr54415 5 144965793 to 144965877 84 - TSS region transcription start site region 54415
Tssr54416 5 144965896 to 144965909 13 - TSS region transcription start site region 54416
Kpna7 5 144983727 to 145009636 25909 - protein coding gene karyopherin alpha 7 (importin alpha 8)
Gm33904 5 145007949 to 145020254 12305 + lncRNA gene predicted gene, 33904
Gm43563 5 145020178 to 145021018 840 + pseudogene predicted gene 43563
Gm4871 5 145029600 to 145032754 3154 - protein coding gene predicted gene 4871
Gm43562 5 145032836 to 145033459 623 + lincRNA gene predicted gene 43562
Gm43561 5 145035374 to 145035821 447 - pseudogene predicted gene 43561
Tssr1746 5 145042978 to 145042983 5 + TSS region transcription start site region 1746
Tssr1747 5 145042986 to 145042998 12 + TSS region transcription start site region 1747
1700018F24Rik 5 145042990 to 145045681 2691 + protein coding gene RIKEN cDNA 1700018F24 gene
Cpgi17016 5 145083633 to 145084226 593 CpG island CpG island 17016
Tssr49722 5 145083831 to 145083887 56 + TSS region transcription start site region 49722
Arpc1a 5 145083869 to 145108756 24887 + protein coding gene actin related protein 2/3 complex, subunit 1A
Tssr49723 5 145083891 to 145083915 24 + TSS region transcription start site region 49723
Tssr49724 5 145084058 to 145084069 11 + TSS region transcription start site region 49724
Tssr49725 5 145084100 to 145084109 9 + TSS region transcription start site region 49725
Tssr49726 5 145104451 to 145104464 13 + TSS region transcription start site region 49726
Tssr49727 5 145104473 to 145104492 19 + TSS region transcription start site region 49727
Tssr49728 5 145104556 to 145104567 11 + TSS region transcription start site region 49728
Tssr49729 5 145104586 to 145104648 62 + TSS region transcription start site region 49729
Tssr1748 5 145104651 to 145104656 5 + TSS region transcription start site region 1748
Cpgi17017 5 145113795 to 145115040 1245 CpG island CpG island 17017
Tssr49730 5 145114249 to 145114275 26 + TSS region transcription start site region 49730
Arpc1b 5 145114256 to 145128186 13930 + protein coding gene actin related protein 2/3 complex, subunit 1B
Tssr49731 5 145114280 to 145114300 20 + TSS region transcription start site region 49731
Tssr49732 5 145123561 to 145123615 54 + TSS region transcription start site region 49732
Tssr49733 5 145123693 to 145123729 36 + TSS region transcription start site region 49733
Tssr49734 5 145126876 to 145126905 29 + TSS region transcription start site region 49734
Tssr49735 5 145127914 to 145127915 1 + TSS region transcription start site region 49735
Tssr49736 5 145127919 to 145127938 19 + TSS region transcription start site region 49736
Tssr49737 5 145127983 to 145127999 16 + TSS region transcription start site region 49737
Tssr49738 5 145128004 to 145128007 3 + TSS region transcription start site region 49738
Tssr49739 5 145128017 to 145128034 17 + TSS region transcription start site region 49739
Tssr54417 5 145128055 to 145128059 4 - TSS region transcription start site region 54417
Tssr49740 5 145128083 to 145128117 34 + TSS region transcription start site region 49740
Tssr54418 5 145128107 to 145128156 49 - TSS region transcription start site region 54418
Pdap1 5 145128770 to 145140089 11319 - protein coding gene PDGFA associated protein 1
Tssr49741 5 145131444 to 145131480 36 + TSS region transcription start site region 49741
Tssr54419 5 145132882 to 145132888 6 - TSS region transcription start site region 54419
Tssr54420 5 145132940 to 145132969 29 - TSS region transcription start site region 54420
Tssr49742 5 145135123 to 145135148 25 + TSS region transcription start site region 49742
Tssr54421 5 145135132 to 145135152 20 - TSS region transcription start site region 54421
Tssr54422 5 145136394 to 145136411 17 - TSS region transcription start site region 54422
Tssr54423 5 145136931 to 145136950 19 - TSS region transcription start site region 54423
Tssr54424 5 145136954 to 145136985 31 - TSS region transcription start site region 54424
Tssr54425 5 145138366 to 145138376 10 - TSS region transcription start site region 54425
Cpgi17018 5 145139505 to 145140743 1238 CpG island CpG island 17018
Tssr54426 5 145139991 to 145140002 11 - TSS region transcription start site region 54426
Tssr54427 5 145140011 to 145140046 35 - TSS region transcription start site region 54427
Tssr54428 5 145140257 to 145140281 24 - TSS region transcription start site region 54428
Tssr49743 5 145140365 to 145140414 49 + TSS region transcription start site region 49743
Bud31 5 145140376 to 145148078 7702 + protein coding gene BUD31 homolog
Tssr49744 5 145140428 to 145140440 12 + TSS region transcription start site region 49744
Ptcd1 5 145147514 to 145167108 19594 - protein coding gene pentatricopeptide repeat domain 1
Cpgi17019 5 145166893 to 145167855 962 CpG island CpG island 17019
Tssr54429 5 145167010 to 145167028 18 - TSS region transcription start site region 54429
Tssr54430 5 145167031 to 145167077 46 - TSS region transcription start site region 54430
Tssr49745 5 145167207 to 145167259 52 + TSS region transcription start site region 49745
Cpsf4 5 145167213 to 145182041 14828 + protein coding gene cleavage and polyadenylation specific factor 4
Atp5j2 5 145183706 to 145191592 7886 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2
Cpgi17020 5 145190950 to 145191686 736 CpG island CpG island 17020
Tssr54431 5 145191534 to 145191548 14 - TSS region transcription start site region 54431
Tssr54432 5 145191549 to 145191565 16 - TSS region transcription start site region 54432
Tssr54433 5 145191566 to 145191572 6 - TSS region transcription start site region 54433
Zkscan14 5 145194946 to 145201868 6922 - protein coding gene zinc finger with KRAB and SCAN domains 14
Cpgi17021 5 145201282 to 145201953 671 CpG island CpG island 17021
Tssr54434 5 145201829 to 145201873 44 - TSS region transcription start site region 54434
Tssr54435 5 145201875 to 145201891 16 - TSS region transcription start site region 54435
Tssr49746 5 145204523 to 145204574 51 + TSS region transcription start site region 49746
Zkscan5 5 145204562 to 145221750 17188 + protein coding gene zinc finger with KRAB and SCAN domains 5
Tssr49747 5 145208555 to 145208562 7 + TSS region transcription start site region 49747
Tssr1749 5 145214533 to 145214539 6 + TSS region transcription start site region 1749
Cpgi17022 5 145218282 to 145219033 751 CpG island CpG island 17022
Gm6287 5 145230512 to 145232301 1789 unclassified gene predicted gene 6287
Cpgi17023 5 145231333 to 145232377 1044 CpG island CpG island 17023
Tssr54436 5 145231559 to 145231570 11 - TSS region transcription start site region 54436
Tssr49748 5 145231710 to 145231754 44 + TSS region transcription start site region 49748
Zfp655 5 145231715 to 145247302 15587 + protein coding gene zinc finger protein 655
Tssr49749 5 145231757 to 145231783 26 + TSS region transcription start site region 49749
Tssr49750 5 145233179 to 145233186 7 + TSS region transcription start site region 49750
Tssr49751 5 145236044 to 145236076 32 + TSS region transcription start site region 49751
Tssr49752 5 145236927 to 145236936 9 + TSS region transcription start site region 49752
Tssr49753 5 145241312 to 145241325 13 + TSS region transcription start site region 49753
Tssr49754 5 145244077 to 145244108 31 + TSS region transcription start site region 49754
Tssr49755 5 145249407 to 145249410 3 + TSS region transcription start site region 49755
Tssr49756 5 145260176 to 145260179 3 + TSS region transcription start site region 49756
Tssr49757 5 145263919 to 145263921 2 + TSS region transcription start site region 49757
Gm9710 5 145265879 to 145266377 498 - pseudogene predicted gene 9710
Gm38740 5 145279506 to 145280623 1117 - lncRNA gene predicted gene, 38740
Cpgi17024 5 145280381 to 145281017 636 CpG island CpG island 17024
Tssr49758 5 145280464 to 145280510 46 + TSS region transcription start site region 49758
Zscan25 5 145280500 to 145291278 10778 + protein coding gene zinc finger and SCAN domain containing 25
Tssr49759 5 145280527 to 145280566 39 + TSS region transcription start site region 49759
Gm42636 5 145292770 to 145295008 2238 + unclassified gene predicted gene 42636
Tssr49760 5 145345254 to 145345270 16 + TSS region transcription start site region 49760
Del(5Cyp3a57-Cyp3a59)1Arte 5 145345279 to 146113287 768008 chromosomal deletion deletion, Chr5, TaconicArtemis 1
Del(5Cyp3a57-Cyp3a59)1Mtos 5 145345279 to 146113287 768008 chromosomal deletion deletion, Chr 5, Mitsuo Oshimura 1
Del(5Cyp3a57-Cyp3a59)1Ahs 5 145345279 to 146113287 768008 chromosomal deletion deletion, Chr 5, Alfred H Schinkel 1
Cyp3a57 5 145345279 to 145390926 45647 + protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 57
Tssr49761 5 145371716 to 145371718 2 + TSS region transcription start site region 49761
Gm2314 5 145400868 to 145401453 585 + pseudogene predicted gene 2314
Tssr49762 5 145404968 to 145404973 5 + TSS region transcription start site region 49762
Gm42859 5 145409648 to 145409840 192 + pseudogene predicted gene 42859
Cyp3a16 5 145436309 to 145469723 33414 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 16
Gm21016 5 145490415 to 145491968 1553 - pseudogene predicted gene, 21016
Cyp3a58-ps 5 145492612 to 145532629 40017 + pseudogene cytochrome P450, family 3, subfamily a, member 58, pseudogene
Gm42863 5 145504097 to 145507054 2957 - unclassified gene predicted gene 42863
Cyp3a41b 5 145558664 to 145584730 26066 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 41B
Tssr54437 5 145584723 to 145584727 4 - TSS region transcription start site region 54437
Gm43381 5 145595796 to 145595960 164 - pseudogene predicted gene 43381
Selenok-ps7 5 145623085 to 145623367 282 - pseudogene selenoprotein K, pseudogene 7
Cyp3a63-ps 5 145624092 to 145633993 9901 - pseudogene cytochrome P450, family 3, subfamily a, member 63, pseudogene
Cyp3a41a 5 145694049 to 145720136 26087 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 41A
Tssr54438 5 145720124 to 145720136 12 - TSS region transcription start site region 54438
Gm43626 5 145760545 to 145760706 161 + pseudogene predicted gene 43626
Selenok-ps2 5 145766200 to 145766914 714 - pseudogene selenoprotein K, pseudogene 2
Cyp3a44 5 145773983 to 145805874 31891 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 44
Tssr54439 5 145805862 to 145805876 14 - TSS region transcription start site region 54439
Tssr49763 5 145809784 to 145809786 2 + TSS region transcription start site region 49763
Gm19089 5 145823610 to 145827940 4330 + pseudogene predicted gene, 19089
Gm38744 5 145834612 to 145838276 3664 + lncRNA gene predicted gene, 38744
Cyp3a11 5 145854607 to 145879854 25247 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 11
Tssr54440 5 145854960 to 145854971 11 - TSS region transcription start site region 54440
Tssr54441 5 145855064 to 145855076 12 - TSS region transcription start site region 54441
Tssr54442 5 145855081 to 145855094 13 - TSS region transcription start site region 54442
Tssr54443 5 145856025 to 145856032 7 - TSS region transcription start site region 54443
Tssr54444 5 145857765 to 145857786 21 - TSS region transcription start site region 54444
Tssr54445 5 145860141 to 145860158 17 - TSS region transcription start site region 54445
D5Mit409 5 145862106 to 145862303 197 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 409
Tssr54446 5 145868581 to 145868598 17 - TSS region transcription start site region 54446
Tssr54447 5 145868990 to 145869015 25 - TSS region transcription start site region 54447
Tssr54448 5 145872400 to 145872423 23 - TSS region transcription start site region 54448
Tssr54449 5 145872466 to 145872478 12 - TSS region transcription start site region 54449