Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:144219526-144403112

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tecpr1 5 144194442 to 144223606 29164 - protein coding gene tectonin beta-propeller repeat containing 1
Tssr49693 5 144220260 to 144220301 41 + TSS region transcription start site region 49693
Tssr54394 5 144221399 to 144221407 8 - TSS region transcription start site region 54394
Cpgi17005 5 144222979 to 144224150 1171 CpG island CpG island 17005
Tssr54395 5 144223516 to 144223618 102 - TSS region transcription start site region 54395
Tssr49694 5 144223712 to 144223771 59 + TSS region transcription start site region 49694
Gm43267 5 144223725 to 144225520 1795 + unclassified gene predicted gene 43267
2900089D17Rik 5 144241781 to 144256205 14424 - antisense lncRNA gene RIKEN cDNA 2900089D17 gene
Tssr54396 5 144243990 to 144244009 19 - TSS region transcription start site region 54396
Tssr49695 5 144244418 to 144244427 9 + TSS region transcription start site region 49695
Tssr49696 5 144244432 to 144244457 25 + TSS region transcription start site region 49696
Bri3 5 144244437 to 144446757 202320 + protein coding gene brain protein I3
6720454L20Rik 5 144246789 to 144247760 971 unclassified gene RIKEN cDNA 6720454L20 gene
Cpgi17006 5 144254688 to 144256152 1464 CpG island CpG island 17006
Tssr54397 5 144255110 to 144255122 12 - TSS region transcription start site region 54397
Tssr49697 5 144255223 to 144255242 19 + TSS region transcription start site region 49697
Tssr49698 5 144255244 to 144255284 40 + TSS region transcription start site region 49698
Tssr49699 5 144255285 to 144255299 14 + TSS region transcription start site region 49699
Tssr54398 5 144255650 to 144255669 19 - TSS region transcription start site region 54398
Tssr54399 5 144255673 to 144255696 23 - TSS region transcription start site region 54399
Tssr49700 5 144255780 to 144255802 22 + TSS region transcription start site region 49700
Tssr49701 5 144255805 to 144255823 18 + TSS region transcription start site region 49701
Tssr49702 5 144255824 to 144255842 18 + TSS region transcription start site region 49702
Tssr54400 5 144255902 to 144255959 57 - TSS region transcription start site region 54400
Tssr54401 5 144255963 to 144256002 39 - TSS region transcription start site region 54401
Tssr49703 5 144256083 to 144256112 29 + TSS region transcription start site region 49703
Tssr49704 5 144256113 to 144256134 21 + TSS region transcription start site region 49704
Tssr49705 5 144256136 to 144256154 18 + TSS region transcription start site region 49705
Gm38675 5 144256221 to 144263819 7598 + lncRNA gene predicted gene, 38675
Baiap2l1 5 144264526 to 144358112 93586 - protein coding gene BAI1-associated protein 2-like 1
Gm15708 5 144277061 to 144280513 3452 + sense intronic lncRNA gene predicted gene 15708
Tssr49706 5 144277218 to 144277258 40 + TSS region transcription start site region 49706
Tssr1745 5 144295110 to 144295117 7 + TSS region transcription start site region 1745
D5Mit377 5 144303910 to 144304135 225 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 377
Cpgi17007 5 144357401 to 144358846 1445 CpG island CpG island 17007
Dmrt1i 5 144357923 to 144361005 3082 + sense intronic lncRNA gene Dmrt1 interacting ncRNA
Tssr54402 5 144357992 to 144358001 9 - TSS region transcription start site region 54402
Tssr54403 5 144358003 to 144358008 5 - TSS region transcription start site region 54403
Tssr54404 5 144358045 to 144358101 56 - TSS region transcription start site region 54404
Tssr54405 5 144358103 to 144358123 20 - TSS region transcription start site region 54405
Tssr49707 5 144358724 to 144358727 3 + TSS region transcription start site region 49707