Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:143950176-144251155

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rsph10b 5 143933035 to 143985719 52684 + protein coding gene radial spoke head 10 homolog B (Chlamydomonas)
Gm17135 5 143950379 to 143981212 30833 - antisense lncRNA gene predicted gene 17135
Tssr49685 5 143981079 to 143981105 26 + TSS region transcription start site region 49685
Ccz1 5 143987909 to 144014853 26944 - protein coding gene CCZ1 vacuolar protein trafficking and biogenesis associated
Tssr54387 5 143992607 to 143992616 9 - TSS region transcription start site region 54387
Tssr54388 5 143992631 to 143992648 17 - TSS region transcription start site region 54388
Tssr54389 5 143992710 to 143992722 12 - TSS region transcription start site region 54389
Gm24311 5 144013998 to 144014101 103 + snRNA gene predicted gene, 24311
Cpgi17000 5 144014503 to 144015076 573 CpG island CpG island 17000
Tssr54390 5 144014858 to 144014918 60 - TSS region transcription start site region 54390
Gm33427 5 144015159 to 144017161 2002 + lncRNA gene predicted gene, 33427
Ocm 5 144019804 to 144026670 6866 - protein coding gene oncomodulin
Tssr1743 5 144026593 to 144026594 1 - TSS region transcription start site region 1743
Tssr54391 5 144026596 to 144026607 11 - TSS region transcription start site region 54391
Tssr1744 5 144026643 to 144026646 3 - TSS region transcription start site region 1744
Cpgi17001 5 144036945 to 144037171 226 CpG island CpG island 17001
D5Mit329 5 144046205 to 144046325 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 329
Tssr54392 5 144050629 to 144050646 17 - TSS region transcription start site region 54392
Gm43615 5 144067418 to 144069190 1772 - pseudogene predicted gene 43615
Cpgi17002 5 144100176 to 144101155 979 CpG island CpG island 17002
Tssr49686 5 144100353 to 144100383 30 + TSS region transcription start site region 49686
Tssr49687 5 144100387 to 144100396 9 + TSS region transcription start site region 49687
Lmtk2 5 144100436 to 144188204 87768 + protein coding gene lemur tyrosine kinase 2
Gm26925 5 144110816 to 144111772 956 - pseudogene predicted gene, 26925
D5Mit416 5 144113079 to 144113395 316 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 416
Tssr49688 5 144174941 to 144174976 35 + TSS region transcription start site region 49688
Cpgi17003 5 144184839 to 144185014 175 CpG island CpG island 17003
Tssr49689 5 144186579 to 144186582 3 + TSS region transcription start site region 49689
Cpgi17004 5 144190150 to 144190429 279 CpG island CpG island 17004
Tssr49690 5 144190267 to 144190270 3 + TSS region transcription start site region 49690
Tssr49691 5 144190284 to 144190334 50 + TSS region transcription start site region 49691
Bhlha15 5 144190286 to 144194441 4155 + protein coding gene basic helix-loop-helix family, member a15
Tssr49692 5 144190408 to 144190421 13 + TSS region transcription start site region 49692
Tecpr1 5 144194442 to 144223606 29164 - protein coding gene tectonin beta-propeller repeat containing 1
Tssr54393 5 144209531 to 144209535 4 - TSS region transcription start site region 54393
Tssr49693 5 144220260 to 144220301 41 + TSS region transcription start site region 49693
Tssr54394 5 144221399 to 144221407 8 - TSS region transcription start site region 54394
Cpgi17005 5 144222979 to 144224150 1171 CpG island CpG island 17005
Tssr54395 5 144223516 to 144223618 102 - TSS region transcription start site region 54395
Tssr49694 5 144223712 to 144223771 59 + TSS region transcription start site region 49694
Gm43267 5 144223725 to 144225520 1795 + unclassified gene predicted gene 43267
2900089D17Rik 5 144241781 to 144256205 14424 - antisense lncRNA gene RIKEN cDNA 2900089D17 gene
Tssr54396 5 144243990 to 144244009 19 - TSS region transcription start site region 54396
Tssr49695 5 144244418 to 144244427 9 + TSS region transcription start site region 49695
Tssr49696 5 144244432 to 144244457 25 + TSS region transcription start site region 49696
Bri3 5 144244437 to 144446757 202320 + protein coding gene brain protein I3
6720454L20Rik 5 144246789 to 144247760 971 unclassified gene RIKEN cDNA 6720454L20 gene