Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:143698724-145018727

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xiaf2 5 126090176 to 144640558 18550382 heritable phenotypic marker X inactivation autosomal factor 2
Cyth3 5 143622447 to 143710250 87803 + protein coding gene cytohesin 3
Usp42 5 143710325 to 143732280 21955 - protein coding gene ubiquitin specific peptidase 42
Cpgi16996 5 143731183 to 143733005 1822 CpG island CpG island 16996
Tssr54378 5 143732215 to 143732272 57 - TSS region transcription start site region 54378
Tssr54379 5 143732273 to 143732316 43 - TSS region transcription start site region 54379
Gm38737 5 143732455 to 143735458 3003 + lncRNA gene predicted gene, 38737
Tssr54380 5 143732464 to 143732475 11 - TSS region transcription start site region 54380
Tssr54381 5 143732478 to 143732520 42 - TSS region transcription start site region 54381
Tssr49670 5 143732585 to 143732616 31 + TSS region transcription start site region 49670
Tssr49671 5 143732633 to 143732643 10 + TSS region transcription start site region 49671
D5Mit224 5 143746046 to 143746176 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 224
Tssr49672 5 143755741 to 143755747 6 + TSS region transcription start site region 49672
Cpgi16997 5 143758068 to 143758448 380 CpG island CpG island 16997
Tssr49673 5 143758293 to 143758363 70 + TSS region transcription start site region 49673
D130017N08Rik 5 143758354 to 143764942 6588 + lincRNA gene RIKEN cDNA D130017N08 gene
Tssr49674 5 143758369 to 143758384 15 + TSS region transcription start site region 49674
Tssr49675 5 143758391 to 143758400 9 + TSS region transcription start site region 49675
Tssr54382 5 143759752 to 143759794 42 - TSS region transcription start site region 54382
Gm42503 5 143770040 to 143773745 3705 + unclassified gene predicted gene 42503
Cpgi16998 5 143817464 to 143818312 848 CpG island CpG island 16998
Tssr49676 5 143817786 to 143817818 32 + TSS region transcription start site region 49676
Eif2ak1 5 143817792 to 143902717 84925 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 1
Tssr49677 5 143817819 to 143817843 24 + TSS region transcription start site region 49677
Tssr49678 5 143817849 to 143817865 16 + TSS region transcription start site region 49678
Ankrd61 5 143890637 to 143895067 4430 - protein coding gene ankyrin repeat domain 61
Tssr49679 5 143890644 to 143890649 5 + TSS region transcription start site region 49679
Tssr54383 5 143894986 to 143894993 7 - TSS region transcription start site region 54383
Tssr54384 5 143895025 to 143895075 50 - TSS region transcription start site region 54384
Tssr54385 5 143895078 to 143895091 13 - TSS region transcription start site region 54385
Tssr49680 5 143902087 to 143902114 27 + TSS region transcription start site region 49680
Tssr49681 5 143902242 to 143902268 26 + TSS region transcription start site region 49681
Aimp2 5 143902704 to 143909839 7135 - protein coding gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
Cpgi16999 5 143909293 to 143910367 1074 CpG island CpG island 16999
Tssr54386 5 143909782 to 143909841 59 - TSS region transcription start site region 54386
Pms2 5 143909964 to 143933968 24004 + protein coding gene PMS1 homolog2, mismatch repair system component
Tssr49682 5 143909973 to 143910047 74 + TSS region transcription start site region 49682
Gm42421 5 143928175 to 143937309 9134 + protein coding gene predicted gene, 42421
Tssr49683 5 143933029 to 143933047 18 + TSS region transcription start site region 49683
Rsph10b 5 143933035 to 143985719 52684 + protein coding gene radial spoke head 10 homolog B (Chlamydomonas)
Tssr49684 5 143933059 to 143933077 18 + TSS region transcription start site region 49684
Gm17135 5 143950379 to 143981212 30833 - antisense lncRNA gene predicted gene 17135
Tssr49685 5 143981079 to 143981105 26 + TSS region transcription start site region 49685
Ccz1 5 143987909 to 144014853 26944 - protein coding gene CCZ1 vacuolar protein trafficking and biogenesis associated
Tssr54387 5 143992607 to 143992616 9 - TSS region transcription start site region 54387
Tssr54388 5 143992631 to 143992648 17 - TSS region transcription start site region 54388
Tssr54389 5 143992710 to 143992722 12 - TSS region transcription start site region 54389
Gm24311 5 144013998 to 144014101 103 + snRNA gene predicted gene, 24311
Cpgi17000 5 144014503 to 144015076 573 CpG island CpG island 17000
Tssr54390 5 144014858 to 144014918 60 - TSS region transcription start site region 54390
Gm33427 5 144015159 to 144017161 2002 + lncRNA gene predicted gene, 33427
Ocm 5 144019804 to 144026670 6866 - protein coding gene oncomodulin
Tssr1743 5 144026593 to 144026594 1 - TSS region transcription start site region 1743
Tssr54391 5 144026596 to 144026607 11 - TSS region transcription start site region 54391
Tssr1744 5 144026643 to 144026646 3 - TSS region transcription start site region 1744
Cpgi17001 5 144036945 to 144037171 226 CpG island CpG island 17001
D5Mit329 5 144046205 to 144046325 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 329
Tssr54392 5 144050629 to 144050646 17 - TSS region transcription start site region 54392
Gm43615 5 144067418 to 144069190 1772 - pseudogene predicted gene 43615
Cpgi17002 5 144100176 to 144101155 979 CpG island CpG island 17002
Tssr49686 5 144100353 to 144100383 30 + TSS region transcription start site region 49686
Tssr49687 5 144100387 to 144100396 9 + TSS region transcription start site region 49687
Lmtk2 5 144100436 to 144188204 87768 + protein coding gene lemur tyrosine kinase 2
Gm26925 5 144110816 to 144111772 956 - pseudogene predicted gene, 26925
D5Mit416 5 144113079 to 144113395 316 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 416
Tssr49688 5 144174941 to 144174976 35 + TSS region transcription start site region 49688
Cpgi17003 5 144184839 to 144185014 175 CpG island CpG island 17003
Tssr49689 5 144186579 to 144186582 3 + TSS region transcription start site region 49689
Cpgi17004 5 144190150 to 144190429 279 CpG island CpG island 17004
Tssr49690 5 144190267 to 144190270 3 + TSS region transcription start site region 49690
Tssr49691 5 144190284 to 144190334 50 + TSS region transcription start site region 49691
Bhlha15 5 144190286 to 144194441 4155 + protein coding gene basic helix-loop-helix family, member a15
Tssr49692 5 144190408 to 144190421 13 + TSS region transcription start site region 49692
Tecpr1 5 144194442 to 144223606 29164 - protein coding gene tectonin beta-propeller repeat containing 1
Tssr54393 5 144209531 to 144209535 4 - TSS region transcription start site region 54393
Tssr49693 5 144220260 to 144220301 41 + TSS region transcription start site region 49693
Tssr54394 5 144221399 to 144221407 8 - TSS region transcription start site region 54394
Cpgi17005 5 144222979 to 144224150 1171 CpG island CpG island 17005
Tssr54395 5 144223516 to 144223618 102 - TSS region transcription start site region 54395
Tssr49694 5 144223712 to 144223771 59 + TSS region transcription start site region 49694
Gm43267 5 144223725 to 144225520 1795 + unclassified gene predicted gene 43267
2900089D17Rik 5 144241781 to 144256205 14424 - antisense lncRNA gene RIKEN cDNA 2900089D17 gene
Tssr54396 5 144243990 to 144244009 19 - TSS region transcription start site region 54396
Tssr49695 5 144244418 to 144244427 9 + TSS region transcription start site region 49695
Tssr49696 5 144244432 to 144244457 25 + TSS region transcription start site region 49696
Bri3 5 144244437 to 144446757 202320 + protein coding gene brain protein I3
6720454L20Rik 5 144246789 to 144247760 971 unclassified gene RIKEN cDNA 6720454L20 gene
Cpgi17006 5 144254688 to 144256152 1464 CpG island CpG island 17006
Tssr54397 5 144255110 to 144255122 12 - TSS region transcription start site region 54397
Tssr49697 5 144255223 to 144255242 19 + TSS region transcription start site region 49697
Tssr49698 5 144255244 to 144255284 40 + TSS region transcription start site region 49698
Tssr49699 5 144255285 to 144255299 14 + TSS region transcription start site region 49699
Tssr54398 5 144255650 to 144255669 19 - TSS region transcription start site region 54398
Tssr54399 5 144255673 to 144255696 23 - TSS region transcription start site region 54399
Tssr49700 5 144255780 to 144255802 22 + TSS region transcription start site region 49700
Tssr49701 5 144255805 to 144255823 18 + TSS region transcription start site region 49701
Tssr49702 5 144255824 to 144255842 18 + TSS region transcription start site region 49702
Tssr54400 5 144255902 to 144255959 57 - TSS region transcription start site region 54400
Tssr54401 5 144255963 to 144256002 39 - TSS region transcription start site region 54401
Tssr49703 5 144256083 to 144256112 29 + TSS region transcription start site region 49703
Tssr49704 5 144256113 to 144256134 21 + TSS region transcription start site region 49704
Tssr49705 5 144256136 to 144256154 18 + TSS region transcription start site region 49705
Gm38675 5 144256221 to 144263819 7598 + lncRNA gene predicted gene, 38675
Baiap2l1 5 144264526 to 144358112 93586 - protein coding gene BAI1-associated protein 2-like 1
Gm15708 5 144277061 to 144280513 3452 + sense intronic lncRNA gene predicted gene 15708
Tssr49706 5 144277218 to 144277258 40 + TSS region transcription start site region 49706
Tssr1745 5 144295110 to 144295117 7 + TSS region transcription start site region 1745
D5Mit377 5 144303910 to 144304135 225 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 377
Cpgi17007 5 144357401 to 144358846 1445 CpG island CpG island 17007
Dmrt1i 5 144357923 to 144361005 3082 + sense intronic lncRNA gene Dmrt1 interacting ncRNA
Tssr54402 5 144357992 to 144358001 9 - TSS region transcription start site region 54402
Tssr54403 5 144358003 to 144358008 5 - TSS region transcription start site region 54403
Tssr54404 5 144358045 to 144358101 56 - TSS region transcription start site region 54404
Tssr54405 5 144358103 to 144358123 20 - TSS region transcription start site region 54405
Tssr49707 5 144358724 to 144358727 3 + TSS region transcription start site region 49707
Tssr49708 5 144406525 to 144406551 26 + TSS region transcription start site region 49708
Gm15709 5 144406602 to 144406814 212 + pseudogene predicted gene 15709
Cpgi17008 5 144408424 to 144408709 285 CpG island CpG island 17008
Gm33552 5 144423004 to 144427232 4228 - lncRNA gene predicted gene, 33552
D5Mit429 5 144463867 to 144463958 91 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 429
Gm33714 5 144465914 to 144479799 13885 - lncRNA gene predicted gene, 33714
Tssr54406 5 144479678 to 144479691 13 - TSS region transcription start site region 54406
Tssr54407 5 144479705 to 144479716 11 - TSS region transcription start site region 54407
Tssr54408 5 144479738 to 144479753 15 - TSS region transcription start site region 54408
Gm33765 5 144495100 to 144520139 25039 - lncRNA gene predicted gene, 33765
D5Dcr35 5 144536489 to 144536591 102 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 35
4930568B11Rik 5 144544887 to 144546035 1148 unclassified gene RIKEN cDNA 4930568B11 gene
Cpgi17009 5 144545177 to 144546922 1745 CpG island CpG island 17009
Tssr49709 5 144545883 to 144545889 6 + TSS region transcription start site region 49709
Nptx2 5 144545902 to 144557478 11576 + protein coding gene neuronal pentraxin 2
Cpgi17010 5 144548109 to 144548296 187 CpG island CpG island 17010
Cpgi17011 5 144556172 to 144556447 275 CpG island CpG island 17011
Tssr49710 5 144556576 to 144556580 4 + TSS region transcription start site region 49710
D5Mit191 5 144567631 to 144567778 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 191
D5Mit43 5 144640428 to 144640558 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 43
D5Dcr36 5 144640473 to 144640569 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 36
D5Mit43.2 5 144640535 to 144640655 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 43.2
Gm6272 5 144723627 to 144723797 170 - pseudogene predicted pseudogene 6272
Tmem130 5 144735915 to 144761578 25663 - protein coding gene transmembrane protein 130
Tssr54409 5 144736542 to 144736553 11 - TSS region transcription start site region 54409
Cpgi17012 5 144761236 to 144761919 683 CpG island CpG island 17012
Tssr54410 5 144761565 to 144761576 11 - TSS region transcription start site region 54410
Tssr54411 5 144761578 to 144761631 53 - TSS region transcription start site region 54411
Tssr54412 5 144761633 to 144761644 11 - TSS region transcription start site region 54412
Gm38739 5 144761714 to 144764217 2503 + lncRNA gene predicted gene, 38739
Trrap 5 144767738 to 144859778 92040 + protein coding gene transformation/transcription domain-associated protein
Cpgi17013 5 144767848 to 144769134 1286 CpG island CpG island 17013
Tssr49711 5 144767932 to 144767990 58 + TSS region transcription start site region 49711
Tssr49712 5 144768116 to 144768123 7 + TSS region transcription start site region 49712
Tssr49713 5 144768141 to 144768154 13 + TSS region transcription start site region 49713
Tssr49714 5 144768158 to 144768182 24 + TSS region transcription start site region 49714
Tssr49715 5 144768504 to 144768531 27 + TSS region transcription start site region 49715
Tssr49716 5 144768536 to 144768552 16 + TSS region transcription start site region 49716
Tssr49717 5 144768555 to 144768568 13 + TSS region transcription start site region 49717
Tssr49718 5 144771327 to 144771340 13 + TSS region transcription start site region 49718
Gm23995 5 144774425 to 144774553 128 + snoRNA gene predicted gene, 23995
Tssr49719 5 144789023 to 144789029 6 + TSS region transcription start site region 49719
Cpgi17014 5 144845251 to 144845647 396 CpG island CpG island 17014
Tssr49720 5 144855213 to 144855217 4 + TSS region transcription start site region 49720
Smurf1 5 144876495 to 144965830 89335 - protein coding gene SMAD specific E3 ubiquitin protein ligase 1
Tssr54413 5 144890232 to 144890244 12 - TSS region transcription start site region 54413
Mir7039 5 144896732 to 144896816 84 - miRNA gene microRNA 7039
Gm33821 5 144918455 to 144922772 4317 + lncRNA gene predicted gene, 33821
Tssr49721 5 144919083 to 144919089 6 + TSS region transcription start site region 49721
Cpgi17015 5 144964730 to 144966481 1751 CpG island CpG island 17015
Tssr54414 5 144965763 to 144965786 23 - TSS region transcription start site region 54414
Tssr54415 5 144965793 to 144965877 84 - TSS region transcription start site region 54415
Tssr54416 5 144965896 to 144965909 13 - TSS region transcription start site region 54416
Kpna7 5 144983727 to 145009636 25909 - protein coding gene karyopherin alpha 7 (importin alpha 8)
Gm33904 5 145007949 to 145020254 12305 + lncRNA gene predicted gene, 33904