Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:143625637-144160067

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cyth3 5 143622447 to 143710250 87803 + protein coding gene cytohesin 3
Tssr49669 5 143651222 to 143651246 24 + TSS region transcription start site region 49669
Usp42 5 143710325 to 143732280 21955 - protein coding gene ubiquitin specific peptidase 42
Cpgi16996 5 143731183 to 143733005 1822 CpG island CpG island 16996
Tssr54378 5 143732215 to 143732272 57 - TSS region transcription start site region 54378
Tssr54379 5 143732273 to 143732316 43 - TSS region transcription start site region 54379
Gm38737 5 143732455 to 143735458 3003 + lncRNA gene predicted gene, 38737
Tssr54380 5 143732464 to 143732475 11 - TSS region transcription start site region 54380
Tssr54381 5 143732478 to 143732520 42 - TSS region transcription start site region 54381
Tssr49670 5 143732585 to 143732616 31 + TSS region transcription start site region 49670
Tssr49671 5 143732633 to 143732643 10 + TSS region transcription start site region 49671
D5Mit224 5 143746046 to 143746176 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 224
Tssr49672 5 143755741 to 143755747 6 + TSS region transcription start site region 49672
Cpgi16997 5 143758068 to 143758448 380 CpG island CpG island 16997
Tssr49673 5 143758293 to 143758363 70 + TSS region transcription start site region 49673
D130017N08Rik 5 143758354 to 143764942 6588 + lincRNA gene RIKEN cDNA D130017N08 gene
Tssr49674 5 143758369 to 143758384 15 + TSS region transcription start site region 49674
Tssr49675 5 143758391 to 143758400 9 + TSS region transcription start site region 49675
Tssr54382 5 143759752 to 143759794 42 - TSS region transcription start site region 54382
Gm42503 5 143770040 to 143773745 3705 + unclassified gene predicted gene 42503
Cpgi16998 5 143817464 to 143818312 848 CpG island CpG island 16998
Tssr49676 5 143817786 to 143817818 32 + TSS region transcription start site region 49676
Eif2ak1 5 143817792 to 143902717 84925 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 1
Tssr49677 5 143817819 to 143817843 24 + TSS region transcription start site region 49677
Tssr49678 5 143817849 to 143817865 16 + TSS region transcription start site region 49678
Ankrd61 5 143890637 to 143895067 4430 - protein coding gene ankyrin repeat domain 61
Tssr49679 5 143890644 to 143890649 5 + TSS region transcription start site region 49679
Tssr54383 5 143894986 to 143894993 7 - TSS region transcription start site region 54383
Tssr54384 5 143895025 to 143895075 50 - TSS region transcription start site region 54384
Tssr54385 5 143895078 to 143895091 13 - TSS region transcription start site region 54385
Tssr49680 5 143902087 to 143902114 27 + TSS region transcription start site region 49680
Tssr49681 5 143902242 to 143902268 26 + TSS region transcription start site region 49681
Aimp2 5 143902704 to 143909839 7135 - protein coding gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
Cpgi16999 5 143909293 to 143910367 1074 CpG island CpG island 16999
Tssr54386 5 143909782 to 143909841 59 - TSS region transcription start site region 54386
Pms2 5 143909964 to 143933968 24004 + protein coding gene PMS1 homolog2, mismatch repair system component
Tssr49682 5 143909973 to 143910047 74 + TSS region transcription start site region 49682
Gm42421 5 143928175 to 143937309 9134 + protein coding gene predicted gene, 42421
Tssr49683 5 143933029 to 143933047 18 + TSS region transcription start site region 49683
Rsph10b 5 143933035 to 143985719 52684 + protein coding gene radial spoke head 10 homolog B (Chlamydomonas)
Tssr49684 5 143933059 to 143933077 18 + TSS region transcription start site region 49684
Gm17135 5 143950379 to 143981212 30833 - antisense lncRNA gene predicted gene 17135
Tssr49685 5 143981079 to 143981105 26 + TSS region transcription start site region 49685
Ccz1 5 143987909 to 144014853 26944 - protein coding gene CCZ1 vacuolar protein trafficking and biogenesis associated
Tssr54387 5 143992607 to 143992616 9 - TSS region transcription start site region 54387
Tssr54388 5 143992631 to 143992648 17 - TSS region transcription start site region 54388
Tssr54389 5 143992710 to 143992722 12 - TSS region transcription start site region 54389
Gm24311 5 144013998 to 144014101 103 + snRNA gene predicted gene, 24311
Cpgi17000 5 144014503 to 144015076 573 CpG island CpG island 17000
Tssr54390 5 144014858 to 144014918 60 - TSS region transcription start site region 54390
Gm33427 5 144015159 to 144017161 2002 + lncRNA gene predicted gene, 33427
Ocm 5 144019804 to 144026670 6866 - protein coding gene oncomodulin
Tssr1743 5 144026593 to 144026594 1 - TSS region transcription start site region 1743
Tssr54391 5 144026596 to 144026607 11 - TSS region transcription start site region 54391
Tssr1744 5 144026643 to 144026646 3 - TSS region transcription start site region 1744
Cpgi17001 5 144036945 to 144037171 226 CpG island CpG island 17001
D5Mit329 5 144046205 to 144046325 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 329
Tssr54392 5 144050629 to 144050646 17 - TSS region transcription start site region 54392
Gm43615 5 144067418 to 144069190 1772 - pseudogene predicted gene 43615
Cpgi17002 5 144100176 to 144101155 979 CpG island CpG island 17002
Tssr49686 5 144100353 to 144100383 30 + TSS region transcription start site region 49686
Tssr49687 5 144100387 to 144100396 9 + TSS region transcription start site region 49687
Lmtk2 5 144100436 to 144188204 87768 + protein coding gene lemur tyrosine kinase 2
Gm26925 5 144110816 to 144111772 956 - pseudogene predicted gene, 26925
D5Mit416 5 144113079 to 144113395 316 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 416