Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:143517215-143947272

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rac1 5 143505481 to 143528117 22636 - protein coding gene Rac family small GTPase 1
Tssr54375 5 143517195 to 143517233 38 - TSS region transcription start site region 54375
Gm42502 5 143525660 to 143526748 1088 + unclassified gene predicted gene 42502
Cpgi16992 5 143526725 to 143527097 372 CpG island CpG island 16992
Cpgi16993 5 143527322 to 143528707 1385 CpG island CpG island 16993
Tssr54376 5 143527977 to 143528010 33 - TSS region transcription start site region 54376
Cpgi16994 5 143548357 to 143549284 927 CpG island CpG island 16994
Tssr49665 5 143548700 to 143548756 56 + TSS region transcription start site region 49665
Fam220a 5 143548706 to 143564525 15819 + protein coding gene family with sequence similarity 220, member A
Tssr1742 5 143562157 to 143562164 7 + TSS region transcription start site region 1742
Tssr54377 5 143613421 to 143613434 13 - TSS region transcription start site region 54377
Cpgi16995 5 143622174 to 143623171 997 CpG island CpG island 16995
Tssr49666 5 143622440 to 143622459 19 + TSS region transcription start site region 49666
Cyth3 5 143622447 to 143710250 87803 + protein coding gene cytohesin 3
Tssr49667 5 143622466 to 143622548 82 + TSS region transcription start site region 49667
Tssr49668 5 143622555 to 143622571 16 + TSS region transcription start site region 49668
Tssr49669 5 143651222 to 143651246 24 + TSS region transcription start site region 49669
Usp42 5 143710325 to 143732280 21955 - protein coding gene ubiquitin specific peptidase 42
Cpgi16996 5 143731183 to 143733005 1822 CpG island CpG island 16996
Tssr54378 5 143732215 to 143732272 57 - TSS region transcription start site region 54378
Tssr54379 5 143732273 to 143732316 43 - TSS region transcription start site region 54379
Gm38737 5 143732455 to 143735458 3003 + lncRNA gene predicted gene, 38737
Tssr54380 5 143732464 to 143732475 11 - TSS region transcription start site region 54380
Tssr54381 5 143732478 to 143732520 42 - TSS region transcription start site region 54381
Tssr49670 5 143732585 to 143732616 31 + TSS region transcription start site region 49670
Tssr49671 5 143732633 to 143732643 10 + TSS region transcription start site region 49671
D5Mit224 5 143746046 to 143746176 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 224
Tssr49672 5 143755741 to 143755747 6 + TSS region transcription start site region 49672
Cpgi16997 5 143758068 to 143758448 380 CpG island CpG island 16997
Tssr49673 5 143758293 to 143758363 70 + TSS region transcription start site region 49673
D130017N08Rik 5 143758354 to 143764942 6588 + lincRNA gene RIKEN cDNA D130017N08 gene
Tssr49674 5 143758369 to 143758384 15 + TSS region transcription start site region 49674
Tssr49675 5 143758391 to 143758400 9 + TSS region transcription start site region 49675
Tssr54382 5 143759752 to 143759794 42 - TSS region transcription start site region 54382
Gm42503 5 143770040 to 143773745 3705 + unclassified gene predicted gene 42503
Cpgi16998 5 143817464 to 143818312 848 CpG island CpG island 16998
Tssr49676 5 143817786 to 143817818 32 + TSS region transcription start site region 49676
Eif2ak1 5 143817792 to 143902717 84925 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 1
Tssr49677 5 143817819 to 143817843 24 + TSS region transcription start site region 49677
Tssr49678 5 143817849 to 143817865 16 + TSS region transcription start site region 49678
Ankrd61 5 143890637 to 143895067 4430 - protein coding gene ankyrin repeat domain 61
Tssr49679 5 143890644 to 143890649 5 + TSS region transcription start site region 49679
Tssr54383 5 143894986 to 143894993 7 - TSS region transcription start site region 54383
Tssr54384 5 143895025 to 143895075 50 - TSS region transcription start site region 54384
Tssr54385 5 143895078 to 143895091 13 - TSS region transcription start site region 54385
Tssr49680 5 143902087 to 143902114 27 + TSS region transcription start site region 49680
Tssr49681 5 143902242 to 143902268 26 + TSS region transcription start site region 49681
Aimp2 5 143902704 to 143909839 7135 - protein coding gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
Cpgi16999 5 143909293 to 143910367 1074 CpG island CpG island 16999
Tssr54386 5 143909782 to 143909841 59 - TSS region transcription start site region 54386
Pms2 5 143909964 to 143933968 24004 + protein coding gene PMS1 homolog2, mismatch repair system component
Tssr49682 5 143909973 to 143910047 74 + TSS region transcription start site region 49682
Gm42421 5 143928175 to 143937309 9134 + protein coding gene predicted gene, 42421
Tssr49683 5 143933029 to 143933047 18 + TSS region transcription start site region 49683
Rsph10b 5 143933035 to 143985719 52684 + protein coding gene radial spoke head 10 homolog B (Chlamydomonas)
Tssr49684 5 143933059 to 143933077 18 + TSS region transcription start site region 49684