Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:143377466-143867548

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grid2ip 5 143357338 to 143391798 34460 + protein coding gene glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
Cpgi16988 5 143381635 to 143381950 315 CpG island CpG island 16988
Cpgi16989 5 143387134 to 143387627 493 CpG island CpG island 16989
Gm20635 5 143391789 to 143403695 11906 - antisense lncRNA gene predicted gene 20635
Gm42504 5 143393689 to 143397457 3768 - lincRNA gene predicted gene 42504
Gm43398 5 143395503 to 143398244 2741 + unclassified gene predicted gene 43398
9530056K15Rik 5 143397248 to 143399563 2315 - unclassified gene RIKEN cDNA 9530056K15 gene
Cpgi16990 5 143403405 to 143404652 1247 CpG island CpG island 16990
Tssr49648 5 143403787 to 143403815 28 + TSS region transcription start site region 49648
Tssr49649 5 143403819 to 143403882 63 + TSS region transcription start site region 49649
Kdelr2 5 143403838 to 143421901 18063 + protein coding gene KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
Tssr54370 5 143405240 to 143405258 18 - TSS region transcription start site region 54370
Tssr49650 5 143407064 to 143407067 3 + TSS region transcription start site region 49650
Tssr49651 5 143420995 to 143421010 15 + TSS region transcription start site region 49651
Tssr49652 5 143421318 to 143421319 1 + TSS region transcription start site region 49652
Gm4870 5 143438393 to 143439643 1250 + pseudogene predicted gene 4870
Gm9497 5 143456903 to 143457440 537 + pseudogene predicted gene 9497
Cpgi16991 5 143464420 to 143465110 690 CpG island CpG island 16991
Daglb 5 143464487 to 143504442 39955 + protein coding gene diacylglycerol lipase, beta
Tssr49653 5 143464525 to 143464536 11 + TSS region transcription start site region 49653
Tssr49654 5 143464574 to 143464652 78 + TSS region transcription start site region 49654
Tssr49655 5 143464659 to 143464670 11 + TSS region transcription start site region 49655
Tssr49656 5 143471115 to 143471126 11 + TSS region transcription start site region 49656
Tssr49657 5 143471238 to 143471264 26 + TSS region transcription start site region 49657
Tssr49658 5 143472935 to 143472944 9 + TSS region transcription start site region 49658
Tssr49659 5 143474666 to 143474701 35 + TSS region transcription start site region 49659
Tssr49660 5 143482004 to 143482008 4 + TSS region transcription start site region 49660
Tssr49661 5 143503412 to 143503431 19 + TSS region transcription start site region 49661
Tssr49662 5 143503545 to 143503566 21 + TSS region transcription start site region 49662
Tssr49663 5 143503568 to 143503588 20 + TSS region transcription start site region 49663
Tssr49664 5 143503632 to 143503635 3 + TSS region transcription start site region 49664
Rac1 5 143505481 to 143528117 22636 - protein coding gene Rac family small GTPase 1
Tssr54371 5 143505939 to 143505943 4 - TSS region transcription start site region 54371
Tssr54372 5 143506111 to 143506138 27 - TSS region transcription start site region 54372
Tssr54373 5 143506198 to 143506209 11 - TSS region transcription start site region 54373
Tssr54374 5 143506590 to 143506603 13 - TSS region transcription start site region 54374
Tssr54375 5 143517195 to 143517233 38 - TSS region transcription start site region 54375
Gm42502 5 143525660 to 143526748 1088 + unclassified gene predicted gene 42502
Cpgi16992 5 143526725 to 143527097 372 CpG island CpG island 16992
Cpgi16993 5 143527322 to 143528707 1385 CpG island CpG island 16993
Tssr54376 5 143527977 to 143528010 33 - TSS region transcription start site region 54376
Cpgi16994 5 143548357 to 143549284 927 CpG island CpG island 16994
Tssr49665 5 143548700 to 143548756 56 + TSS region transcription start site region 49665
Fam220a 5 143548706 to 143564525 15819 + protein coding gene family with sequence similarity 220, member A
Tssr1742 5 143562157 to 143562164 7 + TSS region transcription start site region 1742
Tssr54377 5 143613421 to 143613434 13 - TSS region transcription start site region 54377
Cpgi16995 5 143622174 to 143623171 997 CpG island CpG island 16995
Tssr49666 5 143622440 to 143622459 19 + TSS region transcription start site region 49666
Cyth3 5 143622447 to 143710250 87803 + protein coding gene cytohesin 3
Tssr49667 5 143622466 to 143622548 82 + TSS region transcription start site region 49667
Tssr49668 5 143622555 to 143622571 16 + TSS region transcription start site region 49668
Tssr49669 5 143651222 to 143651246 24 + TSS region transcription start site region 49669
Usp42 5 143710325 to 143732280 21955 - protein coding gene ubiquitin specific peptidase 42
Cpgi16996 5 143731183 to 143733005 1822 CpG island CpG island 16996
Tssr54378 5 143732215 to 143732272 57 - TSS region transcription start site region 54378
Tssr54379 5 143732273 to 143732316 43 - TSS region transcription start site region 54379
Gm38737 5 143732455 to 143735458 3003 + lncRNA gene predicted gene, 38737
Tssr54380 5 143732464 to 143732475 11 - TSS region transcription start site region 54380
Tssr54381 5 143732478 to 143732520 42 - TSS region transcription start site region 54381
Tssr49670 5 143732585 to 143732616 31 + TSS region transcription start site region 49670
Tssr49671 5 143732633 to 143732643 10 + TSS region transcription start site region 49671
D5Mit224 5 143746046 to 143746176 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 224
Tssr49672 5 143755741 to 143755747 6 + TSS region transcription start site region 49672
Cpgi16997 5 143758068 to 143758448 380 CpG island CpG island 16997
Tssr49673 5 143758293 to 143758363 70 + TSS region transcription start site region 49673
D130017N08Rik 5 143758354 to 143764942 6588 + lincRNA gene RIKEN cDNA D130017N08 gene
Tssr49674 5 143758369 to 143758384 15 + TSS region transcription start site region 49674
Tssr49675 5 143758391 to 143758400 9 + TSS region transcription start site region 49675
Tssr54382 5 143759752 to 143759794 42 - TSS region transcription start site region 54382
Gm42503 5 143770040 to 143773745 3705 + unclassified gene predicted gene 42503
Cpgi16998 5 143817464 to 143818312 848 CpG island CpG island 16998
Tssr49676 5 143817786 to 143817818 32 + TSS region transcription start site region 49676
Eif2ak1 5 143817792 to 143902717 84925 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 1
Tssr49677 5 143817819 to 143817843 24 + TSS region transcription start site region 49677
Tssr49678 5 143817849 to 143817865 16 + TSS region transcription start site region 49678