Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:143265294-143365311

32 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Zfp316	5	143249697 to 143270022	20325	-	protein coding gene	zinc finger protein 316
Cpgi16977	5	143269054 to 143270456	1402		CpG island	CpG island 16977
Tssr54361	5	143269958 to 143270018	60	-	TSS region	transcription start site region 54361
Tssr49642	5	143270044 to 143270084	40	+	TSS region	transcription start site region 49642
BC030343	5	143270075 to 143272513	2438	+	lincRNA gene	cDNA sequence BC030343
Zfp853	5	143287038 to 143293623	6585	-	protein coding gene	zinc finger protein 853
Cpgi16978	5	143287554 to 143288705	1151		CpG island	CpG island 16978
Cpgi16979	5	143292583 to 143294120	1537		CpG island	CpG island 16979
D5Mit100	5	143294871 to 143295033	162		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 100
E130309D02Rik	5	143301195 to 143315360	14165	-	protein coding gene	RIKEN cDNA E130309D02 gene
Cpgi16980	5	143314057 to 143314339	282		CpG island	CpG island 16980
Cpgi16981	5	143314571 to 143315802	1231		CpG island	CpG island 16981
Gm42501	5	143314839 to 143315864	1025	+	unclassified gene	predicted gene 42501
Tssr54362	5	143315025 to 143315110	85	-	TSS region	transcription start site region 54362
Tssr54363	5	143315266 to 143315291	25	-	TSS region	transcription start site region 54363
Tssr54364	5	143315294 to 143315311	17	-	TSS region	transcription start site region 54364
Tssr54365	5	143315315 to 143315358	43	-	TSS region	transcription start site region 54365
Tssr54366	5	143315360 to 143315396	36	-	TSS region	transcription start site region 54366
Zdhhc4	5	143316489 to 143329252	12763	-	protein coding gene	zinc finger, DHHC domain containing 4
Tssr54367	5	143320278 to 143320282	4	-	TSS region	transcription start site region 54367
Cpgi16982	5	143328632 to 143329464	832		CpG island	CpG island 16982
Tssr54368	5	143329183 to 143329245	62	-	TSS region	transcription start site region 54368
Tssr49643	5	143329293 to 143329322	29	+	TSS region	transcription start site region 49643
0610040B10Rik	5	143329308 to 143332704	3396	+	antisense lncRNA gene	RIKEN cDNA 0610040B10 gene
Gm43397	5	143334635 to 143335425	790	+	lincRNA gene	predicted gene 43397
n-TSaga2	5	143347066 to 143347192	126	-	tRNA gene	nuclear encoded tRNA serine 2 (anticodon AGA)
D5Mit67	5	143349572 to 143349683	111		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 67
Tssr49644	5	143353703 to 143353710	7	+	TSS region	transcription start site region 49644
Grid2ip	5	143357338 to 143391798	34460	+	protein coding gene	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
Cpgi16983	5	143357520 to 143358018	498		CpG island	CpG island 16983
Tssr49645	5	143363890 to 143363919	29	+	TSS region	transcription start site region 49645
Cpgi16984	5	143364058 to 143364620	562		CpG island	CpG island 16984